Characterization of a FourU RNA Thermometer in the 5' Untranslated Region of Autolysin Gene
Journal
Biochemistry
ISSN: 1520-4995
Titre abrégé: Biochemistry
Pays: United States
ID NLM: 0370623
Informations de publication
Date de publication:
17 10 2023
17 10 2023
Historique:
medline:
23
10
2023
pubmed:
13
9
2023
entrez:
12
9
2023
Statut:
ppublish
Résumé
RNA thermometers are noncoding RNA structures located in the 5' untranslated regions (UTRs) of genes that regulate gene expression through temperature-dependent conformational changes. The fourU class of RNA thermometers contains a specific motif in which four consecutive uracil nucleotides are predicted to base pair with the Shine-Dalgarno (SD) sequence in a stem. We employed a bioinformatic search to discover a fourU RNA thermometer in the 5'-UTR of the
Identifiants
pubmed: 37699513
doi: 10.1021/acs.biochem.3c00368
pmc: PMC10586365
doi:
Substances chimiques
5' Untranslated Regions
0
N-Acetylmuramoyl-L-alanine Amidase
EC 3.5.1.28
Types de publication
Journal Article
Research Support, N.I.H., Intramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
2902-2907Références
FEMS Microbiol Rev. 2006 Jan;30(1):3-16
pubmed: 16438677
Arch Virol. 2021 Aug;166(8):2119-2130
pubmed: 34100162
Nat Rev Microbiol. 2012 Mar 16;10(4):255-65
pubmed: 22421878
PLoS Pathog. 2020 Jan 17;16(1):e1008184
pubmed: 31951643
Microbiology (Reading). 1998 Apr;144 ( Pt 4):885-893
pubmed: 9579063
RNA. 2023 Sep;29(9):1365-1378
pubmed: 37217261
PLoS One. 2013 May 21;8(5):e63781
pubmed: 23704938
Biochemistry. 2017 Dec 26;56(51):6629-6638
pubmed: 29172455
Front Microbiol. 2021 May 17;12:687260
pubmed: 34220779
Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15562-7
pubmed: 25313031
Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):14241-6
pubmed: 25228776
Nat Protoc. 2006;1(3):1610-6
pubmed: 17406453
RNA. 2017 Oct;23(10):1569-1581
pubmed: 28739676
Environ Microbiol. 2022 Apr;24(4):2098-2118
pubmed: 35293111
J Mol Biol. 1989 Nov 20;210(2):265-80
pubmed: 2532257
Nucleic Acids Res. 2003 Jul 1;31(13):3429-31
pubmed: 12824340
BMC Bioinformatics. 2016 May 18;17(1):216
pubmed: 27188396
Genetics. 1979 Jul;92(3):721-39
pubmed: 119663
Mol Microbiol. 2007 Jul;65(2):413-24
pubmed: 17630972
J Bacteriol. 1984 Oct;160(1):9-14
pubmed: 6434528
Infect Immun. 2020 Feb 20;88(3):
pubmed: 31792074