An Evolutionary Perspective of Codon Usage Pattern, Dinucleotide Composition and Codon Pair Bias in Prunus Necrotic Ringspot Virus.

Codon Usage / genetics Biological Evolution Evolution, Molecular Amino Acid Sequence
codon pair bias codon usage bias dinucleotide preference natural selection phylogenetic analysis prunus necrotic ringspot virus

Journal

Genes
ISSN: 2073-4425
Titre abrégé: Genes (Basel)
Pays: Switzerland
ID NLM: 101551097

Informations de publication

Date de publication:
28 08 2023
Historique:
received: 31 07 2023
revised: 24 08 2023
accepted: 25 08 2023
medline: 29 9 2023
pubmed: 28 9 2023
entrez: 28 9 2023
Statut: epublish

Résumé

Prunus necrotic ringspot virus (PNRSV) is a significant virus of ornamental plants and fruit trees. It is essential to study this virus due to its impact on the horticultural industry. Several studies on PNRSV diversity and phytosanitary detection technology were reported, but the content on the codon usage bias (CUB), dinucleotide preference and codon pair bias (CPB) of PNRSV is still uncertain. We performed comprehensive analyses on a dataset consisting of 359 coat protein (CP) gene sequences in PNRSV to examine the characteristics of CUB, dinucleotide composition, and CPB. The CUB analysis of PNRSV

Identifiants

DOI: 10.3390/genes14091712 PMID: 37761852 PMC: PMC10530913
pubmed: 37761852
pii: genes14091712
doi: 10.3390/genes14091712
pmc: PMC10530913
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

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Auteurs

Lingqi Wang (L)

College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China.
College of Plant Protection, Yangzhou University, Yangzhou 225009, China.

Haiting Zhao (H)

College of Plant Protection, Yangzhou University, Yangzhou 225009, China.

Zhilei Wang (Z)

College of Plant Protection, Yangzhou University, Yangzhou 225009, China.

Shiwen Ding (S)

College of Plant Protection, Yangzhou University, Yangzhou 225009, China.

Lang Qin (L)

College of Plant Protection, Yangzhou University, Yangzhou 225009, China.
ORCID: 0000-0002-6135-7471

Runzhou Jiang (R)

College of Plant Protection, Yangzhou University, Yangzhou 225009, China.

Xiaolong Deng (X)

College of Plant Protection, Yangzhou University, Yangzhou 225009, China.

Zhen He (Z)

College of Plant Protection, Yangzhou University, Yangzhou 225009, China.
Joint International Research Laboratory of Agriculture and Agri-Product Safety of Ministry of Education of China, Yangzhou University, Yangzhou 225009, China.
ORCID: 0000-0003-2460-1583

Liangjun Li (L)

College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China.
Joint International Research Laboratory of Agriculture and Agri-Product Safety of Ministry of Education of China, Yangzhou University, Yangzhou 225009, China.

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Code génétique › Usage des codons › An Evolutionary Perspective of Codon Usage...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › An Evolutionary Perspective of Codon Usage...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Évolution moléculaire › An Evolutionary Perspective of Codon Usage...
questionsmedicales.fr › Sciences de l'information › Sources d'information › Services d'information › Documentation › Données de séquences moléculaires › Séquence d'acides aminés › An Evolutionary Perspective of Codon Usage...