An end-to-end pipeline for succinic acid production at an industrially relevant scale using Issatchenkia orientalis.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
03 10 2023
Historique:
received: 30 04 2023
accepted: 12 09 2023
medline: 5 10 2023
pubmed: 4 10 2023
entrez: 3 10 2023
Statut: epublish

Résumé

Microbial production of succinic acid (SA) at an industrially relevant scale has been hindered by high downstream processing costs arising from neutral pH fermentation for over three decades. Here, we metabolically engineer the acid-tolerant yeast Issatchenkia orientalis for SA production, attaining the highest titers in sugar-based media at low pH (pH 3) in fed-batch fermentations, i.e. 109.5 g/L in minimal medium and 104.6 g/L in sugarcane juice medium. We further perform batch fermentation using sugarcane juice medium in a pilot-scale fermenter (300×) and achieve 63.1 g/L of SA, which can be directly crystallized with a yield of 64.0%. Finally, we simulate an end-to-end low-pH SA production pipeline, and techno-economic analysis and life cycle assessment indicate our process is financially viable and can reduce greenhouse gas emissions by 34-90% relative to fossil-based production processes. We expect I. orientalis can serve as a general industrial platform for production of organic acids.

Identifiants

pubmed: 37788990
doi: 10.1038/s41467-023-41616-9
pii: 10.1038/s41467-023-41616-9
pmc: PMC10547785
doi:

Substances chimiques

Succinic Acid AB6MNQ6J6L

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

6152

Informations de copyright

© 2023. Springer Nature Limited.

Références

Metab Eng. 2016 Nov;38:464-472
pubmed: 27750033
Chem Rev. 2023 May 10;123(9):5521-5570
pubmed: 36584306
J Ind Microbiol Biotechnol. 2011 Aug;38(8):873-90
pubmed: 21526386
Appl Environ Microbiol. 2012 May;78(9):3325-37
pubmed: 22389371
Bioresour Technol. 2014 Mar;156:232-9
pubmed: 24508660
Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19415-19420
pubmed: 31467169
Bioresour Technol. 2013 Dec;150:486-95
pubmed: 24041977
Microb Cell Fact. 2014 Aug 27;13:121
pubmed: 25159171
Plant Biotechnol J. 2016 Feb;14(2):661-9
pubmed: 26058948
Nat Methods. 2009 May;6(5):343-5
pubmed: 19363495
Curr Microbiol. 2011 Jan;62(1):152-8
pubmed: 20544200
J Ind Microbiol Biotechnol. 2022 Apr 14;49(2):
pubmed: 34549297
Nat Commun. 2020 Apr 23;11(1):1970
pubmed: 32327663
J Ind Microbiol Biotechnol. 2018 Apr;45(4):253-269
pubmed: 29399712
Biotechnol Biofuels. 2021 Jun 27;14(1):145
pubmed: 34176501
Curr Opin Biotechnol. 2014 Dec;30:190-7
pubmed: 25118136
Biotechnol Prog. 2021 Mar;37(2):e3108
pubmed: 33305493
J Biosci Bioeng. 2012 Jan;113(1):76-8
pubmed: 22018735
Anal Chem. 2019 Feb 5;91(3):1838-1846
pubmed: 30586294
Bioinformatics. 2014 May 1;30(9):1333-5
pubmed: 24413674
Metab Eng Commun. 2019 Oct 31;10:e00105
pubmed: 32547923
Yeast. 1995 Apr 15;11(4):355-60
pubmed: 7785336
Biotechnol Bioeng. 2018 Sep;115(9):2232-2242
pubmed: 29896854
Bioprocess Biosyst Eng. 2020 Jul;43(7):1153-1169
pubmed: 32095989
Metab Eng. 2017 Jul;42:126-133
pubmed: 28627452
J Biotechnol. 2015 Nov 20;214:33-42
pubmed: 26362413
Bioresour Technol. 2020 Feb;297:122461
pubmed: 31787518
Bioresour Technol. 2022 Mar;348:126295
pubmed: 34800640
Microb Biotechnol. 2021 May;14(3):1130-1147
pubmed: 33629807
Metab Eng. 2020 May;59:87-97
pubmed: 32007615
PLoS One. 2008;3(11):e3647
pubmed: 18985154
Bioresour Technol. 2022 Jan;344(Pt B):126224
pubmed: 34751156
Bioresour Technol. 2022 Jun;354:127172
pubmed: 35447331
Appl Microbiol Biotechnol. 2008 Dec;81(3):459-64
pubmed: 18777022
Metab Eng. 2018 Nov;50:85-108
pubmed: 29702275
PLoS Pathog. 2018 Jul 19;14(7):e1007138
pubmed: 30024981
Curr Opin Biotechnol. 2016 Dec;42:54-66
pubmed: 26990278
Biotechnol Biofuels. 2018 Aug 30;11:236
pubmed: 30181775
Sci Rep. 2018 Feb 8;8(1):2613
pubmed: 29422502
Bioresour Technol. 2017 Jun;233:51-57
pubmed: 28258996
Metab Eng Commun. 2020 Oct 08;11:e00148
pubmed: 33134082
Bioresour Technol. 2018 Feb;249:612-619
pubmed: 29091845
mSphere. 2019 Jun 26;4(3):
pubmed: 31243078
Nucleic Acids Res. 2009 Feb;37(2):e16
pubmed: 19074487
J Microbiol Biotechnol. 2016 Jan;26(1):1-8
pubmed: 26403818
Biotechnol Biofuels. 2016 Oct 3;9:205
pubmed: 27729943

Auteurs

Vinh G Tran (VG)

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.

Somesh Mishra (S)

Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Department of Agricultural and Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.

Sarang S Bhagwat (SS)

Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Department of Civil and Environmental Engineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.

Saman Shafaei (S)

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.

Yihui Shen (Y)

Department of Chemistry and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08540, USA.

Jayne L Allen (JL)

Department of Civil and Environmental Engineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.

Benjamin A Crosly (BA)

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.

Shih-I Tan (SI)

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.

Zia Fatma (Z)

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.

Joshua D Rabinowitz (JD)

Department of Chemistry and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, 08540, USA.

Jeremy S Guest (JS)

Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA. jsguest@illinois.edu.
Department of Civil and Environmental Engineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA. jsguest@illinois.edu.

Vijay Singh (V)

Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA. vsingh@illinois.edu.
Department of Agricultural and Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. vsingh@illinois.edu.

Huimin Zhao (H)

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. zhao5@illinois.edu.
Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA. zhao5@illinois.edu.
Departments of Chemistry, Biochemistry, and Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. zhao5@illinois.edu.

Articles similaires

Animals Rumen Methane Fermentation Cannabis

Metabolic engineering of

Jae Sung Cho, Zi Wei Luo, Cheon Woo Moon et al.
1.00
Corynebacterium glutamicum Metabolic Engineering Dicarboxylic Acids Pyridines Pyrones
Corynebacterium glutamicum Tyramine Metabolic Engineering Phylogeny Fermentation

Classifications MeSH