Interspecies co-expression analysis of lateral root development using inducible systems in rice, Medicago, and Arabidopsis.
Journal
The Plant journal : for cell and molecular biology
ISSN: 1365-313X
Titre abrégé: Plant J
Pays: England
ID NLM: 9207397
Informations de publication
Date de publication:
Nov 2023
Nov 2023
Historique:
revised:
30
08
2023
received:
28
04
2023
accepted:
13
09
2023
medline:
10
11
2023
pubmed:
4
10
2023
entrez:
4
10
2023
Statut:
ppublish
Résumé
Lateral roots are crucial for plant growth and development, making them an important target for research aiming to improve crop yields and food security. However, their endogenous ontogeny and, as it were, stochastic appearance challenge their study. Lateral Root Inducible Systems (LRIS) can be used to overcome these challenges by inducing lateral roots massively and synchronously. The combination of LRISs with transcriptomic approaches significantly advanced our insights in the molecular control of lateral root formation, in particular for Arabidopsis. Despite this success, LRISs have been underutilized for other plant species or for lateral root developmental stages later than the initiation. In this study, we developed and/or adapted LRISs in rice, Medicago, and Arabidopsis to perform RNA-sequencing during time courses that cover different developmental stages of lateral root formation and primordium development. As such, our study provides three extensive datasets of gene expression profiles during lateral root development in three different plant species. The three LRISs are highly effective but timing and spatial distribution of lateral root induction vary among the species. Detailed characterization of the stages in time and space in the respective species enabled an interspecies co-expression analysis to identify conserved players involved in lateral root development, as illustrated for the AUX/IAA and LBD gene families. Overall, our results provide a valuable resource to identify potentially conserved regulatory mechanisms in lateral root development, and as such will contribute to a better understanding of the complex regulatory network underlying lateral root development.
Substances chimiques
Arabidopsis Proteins
0
Indoleacetic Acids
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1052-1063Subventions
Organisme : European Molecular Biology Organization
ID : 7268
Organisme : Fonds Wetenschappelijk Onderzoek
ID : G027313N
Organisme : Fonds Wetenschappelijk Onderzoek
ID : G002817N
Organisme : Fonds Wetenschappelijk Onderzoek
ID : G020918N
Organisme : Fonds Wetenschappelijk Onderzoek
ID : G022516N
Organisme : Fonds Wetenschappelijk Onderzoek
ID : G024118N
Organisme : Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
Organisme : Laboratoire d'Excellence TULIP
ID : ANR 10 LABX 41
Organisme : Laboratoire d'Excellence TULIP
ID : ANR 18 EURE 0019
Organisme : Ministry of Science and Technology of the People's Republic of China
ID : 2016YFE0109900
Informations de copyright
© 2023 Society for Experimental Biology and John Wiley & Sons Ltd.
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