Dual stop codon suppression in mammalian cells with genomically integrated genetic code expansion machinery.

CP: Biotechnology CP: Molecular biology Genetic code expansion amber suppression bioorthogonal labeling click chemistry mammalian cell culture non-canonical amino acids random genomic integration stop codon suppression unnatural amino acids

Journal

Cell reports methods
ISSN: 2667-2375
Titre abrégé: Cell Rep Methods
Pays: United States
ID NLM: 9918227360606676

Informations de publication

Date de publication:
20 Nov 2023
Historique:
received: 22 04 2023
revised: 22 08 2023
accepted: 12 10 2023
medline: 27 11 2023
pubmed: 8 11 2023
entrez: 7 11 2023
Statut: ppublish

Résumé

Stop codon suppression using dedicated tRNA/aminoacyl-tRNA synthetase (aaRS) pairs allows for genetically encoded, site-specific incorporation of non-canonical amino acids (ncAAs) as chemical handles for protein labeling and modification. Here, we demonstrate that piggyBac-mediated genomic integration of archaeal pyrrolysine tRNA (tRNA

Identifiants

pubmed: 37935196
pii: S2667-2375(23)00290-4
doi: 10.1016/j.crmeth.2023.100626
pmc: PMC10694491
pii:
doi:

Substances chimiques

Codon, Terminator 0
RNA, Transfer 9014-25-9
Amino Acids 0
Amino Acyl-tRNA Synthetases EC 6.1.1.-

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

100626

Informations de copyright

Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of interests The authors declare no competing interests.

Références

Angew Chem Int Ed Engl. 2014 Feb 17;53(8):2245-9
pubmed: 24474648
Biochemistry. 2019 Feb 5;58(5):387-390
pubmed: 30260626
J Am Chem Soc. 2010 Mar 31;132(12):4086-8
pubmed: 20218600
Nat Chem Biol. 2017 Dec;13(12):1253-1260
pubmed: 29035361
Nat Rev Genet. 2021 Mar;22(3):169-184
pubmed: 33318706
Chembiochem. 2021 Nov 16;22(22):3208-3213
pubmed: 34431592
Chem Sci. 2017 Oct 1;8(10):7211-7217
pubmed: 29081953
ACS Synth Biol. 2017 Jan 20;6(1):13-18
pubmed: 27482719
ACS Cent Sci. 2022 Apr 27;8(4):483-492
pubmed: 35559426
Nat Chem Biol. 2017 Dec;13(12):1261-1266
pubmed: 29035363
Nat Methods. 2016 Feb;13(2):158-64
pubmed: 26727110
J Am Chem Soc. 2020 Nov 25;142(47):20080-20087
pubmed: 33175524
Cell. 2013 Dec 5;155(6):1258-69
pubmed: 24290358
Biochim Biophys Acta. 2014 Jun;1844(6):1059-70
pubmed: 24631543
Chembiochem. 2011 Aug 16;12(12):1854-7
pubmed: 21678540
Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16101-6
pubmed: 22988081
ACS Chem Biol. 2018 Nov 16;13(11):3087-3096
pubmed: 30260624
Front Chem. 2021 Nov 11;9:768535
pubmed: 34858945
Chem Biol. 2008 Nov 24;15(11):1187-97
pubmed: 19022179
Cell. 2016 Feb 11;164(4):780-91
pubmed: 26830878
Nucleic Acids Res. 2002 Nov 1;30(21):4692-9
pubmed: 12409460
Cell Death Dis. 2022 Nov 25;13(11):997
pubmed: 36433934
Nat Methods. 2012 Jun 28;9(7):676-82
pubmed: 22743772
Methods Mol Biol. 2018;1728:237-245
pubmed: 29405002
Cell. 2005 Aug 12;122(3):473-83
pubmed: 16096065
J Am Chem Soc. 2014 Nov 5;136(44):15577-83
pubmed: 25350841
Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3141-6
pubmed: 17360621
Biochemistry. 2021 Nov 23;60(46):3455-3469
pubmed: 34196546
Angew Chem Int Ed Engl. 2013 Dec 23;52(52):14080-3
pubmed: 24353230
Science. 2003 Aug 15;301(5635):964-7
pubmed: 12920298
Nat Methods. 2018 Feb;15(2):141-149
pubmed: 29256496
Angew Chem Int Ed Engl. 2023 May 2;62(19):e202219269
pubmed: 36905325
Cell Rep. 2020 Jun 23;31(12):107811
pubmed: 32579937
Nucleic Acids Res. 2018 Jan 9;46(1):1-10
pubmed: 29177436
J Am Chem Soc. 2013 Aug 28;135(34):12540-3
pubmed: 23924161
Bioconjug Chem. 2012 Mar 21;23(3):392-8
pubmed: 22372991
Nat Methods. 2007 Mar;4(3):239-44
pubmed: 17322890
N Biotechnol. 2015 Dec 25;32(6):716-9
pubmed: 25796475
Archaea. 2010 Aug 17;2010:
pubmed: 20847933
J Am Chem Soc. 2004 Nov 10;126(44):14306-7
pubmed: 15521721
Annu Rev Biochem. 2014;83:379-408
pubmed: 24555827
Nat Biotechnol. 2014 May;32(5):465-72
pubmed: 24727715
Nat Methods. 2023 Jan;20(1):95-103
pubmed: 36550276
J Am Chem Soc. 2009 Sep 16;131(36):12921-3
pubmed: 19702307
Bioorg Med Chem. 2020 Dec 15;28(24):115772
pubmed: 33069552
Nucleic Acids Res. 2021 Jun 21;49(11):e62
pubmed: 33684219
Proc Natl Acad Sci U S A. 2020 Apr 21;117(16):8845-8849
pubmed: 32253306
Science. 2002 May 24;296(5572):1459-62
pubmed: 12029131
Cell Chem Biol. 2018 Oct 18;25(10):1304-1312.e5
pubmed: 30078635
Angew Chem Int Ed Engl. 2018 Mar 5;57(11):2831-2834
pubmed: 29356244
PLoS Genet. 2012;8(3):e1002608
pubmed: 22479203

Auteurs

Birthe Meineke (B)

Science for Life Laboratory, Karolinska Institutet, Department of Medical Biochemistry and Biophysics, Division of Genome Biology, 17165 Stockholm, Sweden; Ming Wai Lau Centre for Reparative Medicine, Stockholm Node, Karolinska Institutet, 17165 Stockholm, Sweden. Electronic address: birthe.meineke@scilifelab.se.

Johannes Heimgärtner (J)

Science for Life Laboratory, Karolinska Institutet, Department of Medical Biochemistry and Biophysics, Division of Genome Biology, 17165 Stockholm, Sweden; Ming Wai Lau Centre for Reparative Medicine, Stockholm Node, Karolinska Institutet, 17165 Stockholm, Sweden.

Rozina Caridha (R)

Science for Life Laboratory, Karolinska Institutet, Department of Medical Biochemistry and Biophysics, Division of Genome Biology, 17165 Stockholm, Sweden; Ming Wai Lau Centre for Reparative Medicine, Stockholm Node, Karolinska Institutet, 17165 Stockholm, Sweden.

Matthias F Block (MF)

Science for Life Laboratory, Karolinska Institutet, Department of Medical Biochemistry and Biophysics, Division of Genome Biology, 17165 Stockholm, Sweden.

Kyle J Kimler (KJ)

Science for Life Laboratory, Karolinska Institutet, Department of Medical Biochemistry and Biophysics, Division of Genome Biology, 17165 Stockholm, Sweden.

Maria F Pires (MF)

Science for Life Laboratory, Karolinska Institutet, Department of Medical Biochemistry and Biophysics, Division of Genome Biology, 17165 Stockholm, Sweden.

Michael Landreh (M)

Department of Microbiology, Tumor and Cell Biology, Science for Life Laboratory, Karolinska Institutet, 17165 Stockholm, Sweden.

Simon J Elsässer (SJ)

Science for Life Laboratory, Karolinska Institutet, Department of Medical Biochemistry and Biophysics, Division of Genome Biology, 17165 Stockholm, Sweden; Ming Wai Lau Centre for Reparative Medicine, Stockholm Node, Karolinska Institutet, 17165 Stockholm, Sweden. Electronic address: simon.elsasser@scilifelab.se.

Articles similaires

Aminoacid functionalised magnetite nanoparticles Fe

Spoială Angela, Motelica Ludmila, Ilie Cornelia-Ioana et al.
1.00
Magnetite Nanoparticles Tryptophan Biocompatible Materials Microbial Sensitivity Tests Humans
Mycobacterium tuberculosis Animals Guinea Pigs Bacterial Proteins Toxin-Antitoxin Systems
Intrinsically Disordered Proteins Protein Conformation Nuclear Magnetic Resonance, Biomolecular Amino Acids Computational Biology
1.00
Animals Humans Mice RNA, Transfer Methyltransferases

Classifications MeSH