A new Zymomonas mobilis platform strain for the efficient production of chemicals.


Journal

Microbial cell factories
ISSN: 1475-2859
Titre abrégé: Microb Cell Fact
Pays: England
ID NLM: 101139812

Informations de publication

Date de publication:
22 May 2024
Historique:
received: 21 02 2024
accepted: 07 05 2024
medline: 22 5 2024
pubmed: 22 5 2024
entrez: 21 5 2024
Statut: epublish

Résumé

Zymomonas mobilis is well known for its outstanding ability to produce ethanol with both high specific productivity and with high yield close to the theoretical maximum. The key enzyme in the ethanol production pathway is the pyruvate decarboxylase (PDC) which is converting pyruvate to acetaldehyde. Since it is widely considered that its gene pdc is essential, metabolic engineering strategies aiming to produce other compounds derived from pyruvate need to find ways to reduce PDC activity. Here, we present a new platform strain (sGB027) of Z. mobilis in which the native promoter of pdc was replaced with the IPTG-inducible P We demonstrated that our new platform strain can be an excellent starting point for the efficient production of various compounds derived from pyruvate with Z. mobilis and can thus enhance the establishment of this organism as a workhorse for biotechnological production processes.

Sections du résumé

BACKGROUND BACKGROUND
Zymomonas mobilis is well known for its outstanding ability to produce ethanol with both high specific productivity and with high yield close to the theoretical maximum. The key enzyme in the ethanol production pathway is the pyruvate decarboxylase (PDC) which is converting pyruvate to acetaldehyde. Since it is widely considered that its gene pdc is essential, metabolic engineering strategies aiming to produce other compounds derived from pyruvate need to find ways to reduce PDC activity.
RESULTS RESULTS
Here, we present a new platform strain (sGB027) of Z. mobilis in which the native promoter of pdc was replaced with the IPTG-inducible P
CONCLUSION CONCLUSIONS
We demonstrated that our new platform strain can be an excellent starting point for the efficient production of various compounds derived from pyruvate with Z. mobilis and can thus enhance the establishment of this organism as a workhorse for biotechnological production processes.

Identifiants

pubmed: 38773442
doi: 10.1186/s12934-024-02419-9
pii: 10.1186/s12934-024-02419-9
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

143

Informations de copyright

© 2024. The Author(s).

Références

Yang SH, Fei Q, Zhang YP, Contreras LM, Utturkar SM, Brown SD, Himmel ME, Zhang M. Zymomonas mobilis as a model system for production of biofuels and biochemicals. Microb Biotechnol. 2016;9:699–717.
doi: 10.1111/1751-7915.12408
Weir PM. The ecology of Zymomonas: a review. Folia Microbiol. 2016;61:385–92.
doi: 10.1007/s12223-016-0447-x
Panesar PS, Marwaha SS, Kennedy JF. Zymomonas mobilis: an alternative ethanol producer. J Chem Technol Biotechnol. 2006;81:623–35.
doi: 10.1002/jctb.1448
Rogers PL, Lee KJ, Tribe DE. Kinetics of Alcohol production by Zymomonas mobilis at high Sugar concentrations. Biotechnol Lett. 1979;1:165–70.
doi: 10.1007/BF01388142
Rutkis R, Kalnenieks U, Stalidzans E, Fell DA. Kinetic modelling of the Zymomonas mobilis Entner-Doudoroff pathway: insights into control and functionality. Microbiology-Sgm. 2013;159:2674–89.
doi: 10.1099/mic.0.071340-0
Sprenger GA. Carbohydrate metabolism in Zymomonas mobilis: a catabolic highway with some scenic routes. FEMS Microbiol Lett. 1996;145:301–7.
doi: 10.1111/j.1574-6968.1996.tb08593.x
Jones CW, Doelle HW. Kinetic control of ethanol-production by Zymomonas mobilis. Appl Microbiol Biotechnol. 1991;35:4–9.
doi: 10.1007/BF00180626
Bao WW, Shen W, Peng QQ, Du J, Yang SH. Metabolic Engineering of Zymomonas mobilis for Acetoin production by Carbon Redistribution and Cofactor Balance. Fermentation-Basel. 2023;9:113.
doi: 10.3390/fermentation9020113
Behrendt G, Frohwitter J, Vlachonikolou M, Klamt S, Bettenbrock K. Zymo-Parts: a Golden Gate Modular Cloning Toolbox for Heterologous Gene expression in Zymomonas mobilis. ACS Synth Biol. 2022;11:3855–64.
doi: 10.1021/acssynbio.2c00428
Khandelwal R, Srivastava P, Bisaria VS. Expression of Escherichia coli malic enzyme gene in Zymomonas mobilis for production of malic acid. J Biotechnol. 2022;351:23–9.
doi: 10.1016/j.jbiotec.2022.04.007
Qiu MY, Shen W, Yan XY, He QN, Cai DB, Chen SW, Wei H, Knoshaug EP, Zhang M, Himmel ME, Yang SH. Metabolic engineering of Zymomonas mobilis for anaerobic isobutanol production. Biotechnol Biofuels. 2020;13:15.
doi: 10.1186/s13068-020-1654-x
Uhlenbusch I, Sahm H, Sprenger GA. Expression of an L-alanine dehydrogenase gene in Zymomonas mobilis and excretion of L-alanine. Appl Environ Microbiol. 1991;57:1360–6.
doi: 10.1128/aem.57.5.1360-1366.1991
Yang SH, Mohagheghi A, Franden MA, Chou YC, Chen XW, Dowe N, Himmel ME, Zhang M. Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars. Biotechnol Biofuels. 2016;9:189.
doi: 10.1186/s13068-016-0606-y
Hu MM, Bao WW, Peng QQ, Hu W, Yang XY, Xiang Y, Yan XY, Li M, Xu P, He QN, Yang SH. Metabolic engineering of Zymomonas mobilis for co-production of D-lactic acid and ethanol using waste feedstocks of molasses and corncob residue hydrolysate. Front Bioeng Biotechnol. 2023;11:e1135484.
doi: 10.3389/fbioe.2023.1135484
Liu Y, Ghosh IN, Martien J, Zhang Y, Amador-Noguez D, Landick R. Regulated redirection of central carbon flux enhances anaerobic production of bioproducts in Zymomonas mobilis. Metab Eng. 2020;61:261–74.
doi: 10.1016/j.ymben.2020.06.005
Rutkis R, Strazdina I, Lasa Z, Bruheim P, Kalnenieks U. Ethanologenesis and respiration in a pyruvate decarboxylase-deficient Zymomonas mobilis. BMC Res Notes. 2021;14:208.
doi: 10.1186/s13104-021-05625-5
Zhao X, Rogers PL, Kwon EE, Sang CJ, Young JJ. Growth characteristics of a pyruvate decarboxylase mutant strain of Zymomonas mobilis. J Life Sci. 2015;25:1290–7.
doi: 10.5352/JLS.2015.25.11.1290
Zhang M, Chou YC, Franden MA, Himmel ME. Engineered Zymomonas for the production of 2,3-Butanediol. US Patent No US20190153483A1 2018-10-29.
Jacobson TB, Adamczyk PA, Stevenson DM, Regner M, Ralph J, Reed JL, Amador-Noguez D. (2)H and (13)C metabolic flux analysis elucidates in vivo thermodynamics of the ED pathway in Zymomonas mobilis. Metab Eng. 2019;54:301–16.
doi: 10.1016/j.ymben.2019.05.006
Engler C, Kandzia R, Marillonnet S. A One Pot, one step, Precision Cloning Method with High Throughput Capability. PLoS ONE. 2008;3:e3647.
doi: 10.1371/journal.pone.0003647
Database CU. kazusa.or.jp. In visited 03/23.
Deuschle U, Kammerer W, Gentz R, Bujard H. Promoters of Escherichia coli: a hierarchy of in vivo strength indicates alternate structures. EMBO J. 1986;5:2987–94.
doi: 10.1002/j.1460-2075.1986.tb04596.x
Boecker S, Schulze P, Klamt S. Growth-coupled anaerobic production of isobutanol from glucose in minimal medium with Escherichia coli. Biotechnol Biofuels Bioprod. 2023;16:148.
doi: 10.1186/s13068-023-02395-z
Kalnenieks U, Balodite E, Strähler S, Strazdina I, Rex J, Pentjuss A, Fuchino K, Bruheim P, Rutkis R, Pappas KM, et al. Improvement of Acetaldehyde Production in Zymomonas mobilis by Engineering of its aerobic metabolism. Front Microbiol. 2019;10:2533.
doi: 10.3389/fmicb.2019.02533
Nitzschke A, Bettenbrock K. All three quinone species play distinct roles in ensuring optimal growth under aerobic and fermentative conditions in E. Coli K12. PLoS ONE. 2018;13:e0194699.
doi: 10.1371/journal.pone.0194699
Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J. qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 2007;8:R19.
doi: 10.1186/gb-2007-8-2-r19
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods. 2001;25:402–8.
doi: 10.1006/meth.2001.1262
Zhang J, Biczok R, Ruschhaupt M. The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR). R package version 1380 2019.
Vera JM, Ghosh IN, Zhang Y, Hebert AS, Coon JJ, Landick R. Genome-scale transcription-translation mapping reveals features of Zymomonas mobilis transcription units and promoters. mSystems. 2020;5:e00250–00220.
doi: 10.1128/mSystems.00250-20
Brenac L, Baidoo EEK, Keasling JD, Budin I. Distinct functional roles for hopanoid composition in the chemical tolerance of Zymomonas mobilis. Mol Microbiol. 2019;112:1564–75.
doi: 10.1111/mmi.14380
Fuchino K, Chan H, Hwang LC, Bruheim P. The Ethanologenic Bacterium Zymomonas mobilis divides asymmetrically and exhibits heterogeneity in DNA content. Appl Environ Microbiol. 2021;87:e02441–02420.
doi: 10.1128/AEM.02441-20
Fuchino K, Wasser D, Soppa J. Genome Copy number quantification revealed that the Ethanologenic Alpha-Proteobacterium Zymomonas mobilis is polyploid. Front Microbiol. 2021;12:705895.
doi: 10.3389/fmicb.2021.705895
Behrendt G, Vlachonikolou M, Tietgens H, Bettenbrock K. Construction and comparison of different vehicles for heterologous gene expression in Zymomonas mobilis. Microb Biotechnol. 2024;17:e14381.
doi: 10.1111/1751-7915.14381
Abedi E, Hashemi SMB. Lactic acid production - producing microorganisms and substrates sources-state of art. Heliyon. 2020;6:e04974.
doi: 10.1016/j.heliyon.2020.e04974
Ojo AO, de Smidt O. Lactic acid: a Comprehensive Review of production to purification. Processes. 2023;11:688.
doi: 10.3390/pr11030688
Zhang J, Greasham R. Chemically defined media for commercial fermentations. Appl Microbiol Biotechnol. 1999;51:407–21.
doi: 10.1007/s002530051411
Zhang X, Jantama K, Moore JC, Shanmugam KT, Ingram LO. Production of L -alanine by metabolically engineered Escherichia coli. Appl Microbiol Biotechnol. 2007;77:355–66.
doi: 10.1007/s00253-007-1170-y
Liu P, Xu H, Zhang X. Metabolic engineering of microorganisms for L-alanine production. J Ind Microbiol Biotechnol. 2022;49:kuab057.
doi: 10.1093/jimb/kuab057
Sakamoto Y, Nagata S, Esaki N, Tanaka H, Soda K. Gene cloning, purification and characterization of Thermostable Alanine dehydrogenase of Bacillus stearothermophilus. J Ferment Bioeng. 1990;69:154–8.
doi: 10.1016/0922-338X(90)90038-X
Pankova LM, Shvinka JE, Beker MJ. Regulation of intracellular H + balance in Zymomonas mobilis 113 during the Shift from anaerobic to aerobic conditions. Appl Microbiol Biotechnol. 1988;28:583–8.
doi: 10.1007/BF00250417
Harder BJ, Bettenbrock K, Klamt S. Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli. Biotechnol Bioeng. 2018;115:156–64.
doi: 10.1002/bit.26446
Li L, Deng AH, Liu SW, Wang JY, Shi RL, Wang TT, Cui D, Bai H, Zhang Y, Wen TY. A Universal Method for developing autoinduction expression systems using AHL-Mediated quorum-sensing circuits. ACS Synth Biol. 2022;11:3114–9.
doi: 10.1021/acssynbio.2c00400

Auteurs

Jonas Frohwitter (J)

Analysis and Redesign of Biological Networks, Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr. 1, 39106, Magdeburg, Germany.

Gerrich Behrendt (G)

Analysis and Redesign of Biological Networks, Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr. 1, 39106, Magdeburg, Germany.

Steffen Klamt (S)

Analysis and Redesign of Biological Networks, Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr. 1, 39106, Magdeburg, Germany.

Katja Bettenbrock (K)

Analysis and Redesign of Biological Networks, Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr. 1, 39106, Magdeburg, Germany. bettenbrock@mpi-magdeburg.mpg.de.

Articles similaires

Female Biofilms Animals Lactobacillus Mice
Saccharomyces cerevisiae Aldehydes Biotransformation Flavoring Agents Lipoxygenase
Host Specificity Bacteriophages Genomics Algorithms Escherichia coli
Biofilms Horses Animals Escherichia coli Mesenchymal Stem Cells

Classifications MeSH