Unveiling the unknown viral world in groundwater.

Groundwater / microbiology Viruses / genetics Virome / genetics Bacteria / genetics Metagenomics China Archaea / virology Phylogeny Water Microbiology Metagenome Genome, Viral / genetics

Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
08 Aug 2024
Historique:
received: 04 12 2023
accepted: 01 08 2024
medline: 9 8 2024
pubmed: 9 8 2024
entrez: 8 8 2024
Statut: epublish

Résumé

Viruses as the prevailing biological entities are poorly understood in underground realms. Here, we establish the first metagenomic Groundwater Virome Catalogue (GWVC) comprising 280,420 viral species ( ≥ 5 kb) detected from 607 monitored wells in seven geo-environmental zones throughout China. In expanding ~10-fold the global portfolio of known groundwater viruses, we uncover over 99% novel viruses and about 95% novel viral clusters. By linking viruses to hosts from 119 prokaryotic phyla, we double the number of microbial phyla known to be virus-infected in groundwater. As keystone ultrasmall symbionts in aquifers, CPR bacteria and DPANN archaea are susceptible to virulent viruses. Certain complete CPR viruses even likely infect non-CPR bacteria, while partial CPR/DPANN viruses harbor cell-surface modification genes that assist symbiont cell adhesion to free-living microbes. This study reveals the unknown viral world and auxiliary metabolism associated with methane, nitrogen, sulfur, and phosphorus cycling in groundwater, and highlights the importance of subsurface virosphere in viral ecology.

Identifiants

DOI: 10.1038/s41467-024-51230-y PMID: 39117653
pubmed: 39117653
doi: 10.1038/s41467-024-51230-y
pii: 10.1038/s41467-024-51230-y
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

6788

Subventions

Organisme : National Natural Science Foundation of China (National Science Foundation of China)
ID : U2240205
Organisme : National Natural Science Foundation of China (National Science Foundation of China)
ID : 51721006
Organisme : National Natural Science Foundation of China (National Science Foundation of China)
ID : 423B2703

Informations de copyright

© 2024. The Author(s).

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Auteurs

Zongzhi Wu (Z)

Eco-environment and Resource Efficiency Research Laboratory, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China.
Environmental Microbiome and Innovative Genomics Laboratory, College of Environmental Sciences and Engineering, Peking University, Beijing, 100871, PR China.
ORCID: 0000-0002-5153-5246

Tang Liu (T)

Eco-environment and Resource Efficiency Research Laboratory, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China.
College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, 518060, PR China.

Qian Chen (Q)

Eco-environment and Resource Efficiency Research Laboratory, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China.
Environmental Microbiome and Innovative Genomics Laboratory, College of Environmental Sciences and Engineering, Peking University, Beijing, 100871, PR China.

Tianyi Chen (T)

Eco-environment and Resource Efficiency Research Laboratory, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China.

Jinyun Hu (J)

Environmental Microbiome and Innovative Genomics Laboratory, College of Environmental Sciences and Engineering, Peking University, Beijing, 100871, PR China.

Liyu Sun (L)

Eco-environment and Resource Efficiency Research Laboratory, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China.

Bingxue Wang (B)

Eco-environment and Resource Efficiency Research Laboratory, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China.

Wenpeng Li (W)

Center for Groundwater Monitoring, China Institute of Geo-environmental Monitoring, Beijing, 100081, PR China.

Jinren Ni (J)

Eco-environment and Resource Efficiency Research Laboratory, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, 518055, PR China. jinrenni@pku.edu.cn.
College of Environmental Sciences and Engineering, Key Laboratory of Water and Sediment Sciences, Ministry of Education, Peking University, Beijing, 100871, PR China. jinrenni@pku.edu.cn.
ORCID: 0000-0002-9114-8347

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Classifications MeSH

questionsmedicales.fr › Phénomènes physiques › Phénomènes géologiques › Nappe phréatique › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Virus › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Environnement et santé publique › Environnement › Écosystème › Biodiversité › Biote › Microbiote › Virome › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Bactéries › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Métagénomique › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Régions géographiques › Asie › Extrême-Orient › Chine › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Archéobactéries › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Environnement et santé publique › Santé publique › Microbiologie de l'environnement › Microbiologie de l'eau › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Métagénome › Unveiling the unknown viral world in groundwater.
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome viral › Unveiling the unknown viral world in groundwater.