Synonymous codon substitutions modulate transcription and translation of a divergent upstream gene by modulating antisense RNA production.


Journal

Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876

Informations de publication

Date de publication:
03 Sep 2024
Historique:
medline: 27 8 2024
pubmed: 27 8 2024
entrez: 27 8 2024
Statut: ppublish

Résumé

Synonymous codons were originally viewed as interchangeable, with no phenotypic consequences. However, substantial evidence has now demonstrated that synonymous substitutions can perturb a variety of gene expression and protein homeostasis mechanisms, including translational efficiency, translational fidelity, and cotranslational folding of the encoded protein. To date, most studies of synonymous codon-derived perturbations have focused on effects within a single gene. Here, we show that synonymous codon substitutions made far within the coding sequence of

Identifiants

pubmed: 39190361
doi: 10.1073/pnas.2405510121
doi:

Substances chimiques

RNA, Antisense 0
Chloramphenicol O-Acetyltransferase EC 2.3.1.28
Codon 0
Escherichia coli Proteins 0
RNA, Bacterial 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e2405510121

Subventions

Organisme : NIGMS NIH HHS
ID : DP1 GM146256
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM120733
Pays : United States

Déclaration de conflit d'intérêts

Competing interests statement:The authors declare no competing interest.

Auteurs

Anabel Rodriguez (A)

Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556.

Jacob D Diehl (JD)

Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556.

Gabriel S Wright (GS)

Department of Computer Science & Engineering, University of Notre Dame, Notre Dame, IN 46556.

Christopher D Bonar (CD)

Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556.

Taylor J Lundgren (TJ)

Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556.

McKenze J Moss (MJ)

Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556.

Jun Li (J)

Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, IN 46556.

Tijana Milenkovic (T)

Department of Computer Science & Engineering, University of Notre Dame, Notre Dame, IN 46556.

Paul W Huber (PW)

Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556.

Matthew M Champion (MM)

Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556.

Scott J Emrich (SJ)

Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, TN 37996.

Patricia L Clark (PL)

Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556.

Articles similaires

Genome, Bacterial Virulence Phylogeny Genomics Plant Diseases
Female Biofilms Animals Lactobacillus Mice
Host Specificity Bacteriophages Genomics Algorithms Escherichia coli
Biofilms Horses Animals Escherichia coli Mesenchymal Stem Cells

Classifications MeSH