Epidemiology and molecular evolution of GI.1 sapovirus in the recent era.
Sapovirus
/ genetics
Humans
Caliciviridae Infections
/ epidemiology
Phylogeny
Japan
/ epidemiology
Disease Outbreaks
Genotype
Evolution, Molecular
Genome, Viral
/ genetics
Open Reading Frames
/ genetics
Gastroenteritis
/ virology
High-Throughput Nucleotide Sequencing
Amino Acid Substitution
Molecular Epidemiology
Whole Genome Sequencing
Mutation
GI.1 genotype
ORFs
deduced amino acid sequences
epidemics
molecular evolution
phylogenetic analysis
sapovirus
Journal
Journal of medical virology
ISSN: 1096-9071
Titre abrégé: J Med Virol
Pays: United States
ID NLM: 7705876
Informations de publication
Date de publication:
Sep 2024
Sep 2024
Historique:
revised:
25
08
2024
received:
02
06
2024
accepted:
27
08
2024
medline:
12
9
2024
pubmed:
12
9
2024
entrez:
12
9
2024
Statut:
ppublish
Résumé
Sapovirus (SaV) infection is increasing worldwide. Herein, we provided evidence of a significant increase in SaV infection in Japan during 2010-2022, primarily due to the considerable (p = 0.0003) rise of the GI.1 genotype. Furthermore, we found that all major and minor SaV outbreaks in Japan, including the largest SaV outbreak in 2021-2022, were caused by the GI.1 genotype. Therefore, to get insight into the underlying molecular mechanism behind this rising trend of the SaV GI.1 type, we selected 15 SaV GI.1 outbreak strains for complete genome analysis through next-generation sequencing. Phylogenetically, our strains remained clustered in different branches in lineages I and II among the GI.1 genotype. We showed all amino acid (aa) substitutions in different open reading frames (ORFs) in these strains. Importantly, we have demonstrated that the strains involved in the largest SaV outbreak in Japan in 2021-2022 belonged to lineage II and possessed the third ORF. We have identified some unique aa mutations in these major outbreak strains in the NS1 and NS6-NS7 regions that are thought to be associated with viral pathogenicity, cell tropism, and epidemiological competence. Thus, in addition to enriching the database of SaV's complete sequences, this study provides insights into its important mutations.
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e29904Subventions
Organisme : Grants-in-Aid for Japan Agency for Medical Research and Development (AMED)
ID : JP23fk0108668
Organisme : Grants-in-Aid for Japan Agency for Medical Research and Development (AMED)
ID : JP24fk0108668
Organisme : Japan Society for the Promotion of Science (JSPS)
ID : 24K11007
Organisme : Research Center for GLOBAL and LOCAL Infectious Diseases, Oita University
ID : 2024B02
Informations de copyright
© 2024 Wiley Periodicals LLC.
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