Mitochondrial phylogeny and distribution of cytoplasmic male sterility-associated genes in Beta vulgaris.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2024
Historique:
received: 01 05 2024
accepted: 25 07 2024
medline: 27 9 2024
pubmed: 27 9 2024
entrez: 27 9 2024
Statut: epublish

Résumé

Cytoplasmic male sterility (CMS) is a mitochondrial-encoded trait that confers reproductive defects in males but not in females or any vegetative function. Why CMS is so often found in plants should be investigated from the viewpoint of mitochondrial phylogeny. Beta vulgaris, including the wild subspecies maritima and cultivated subspecies vulgaris (e.g., sugar beet), is known to be mitochondrially polymorphic, from which multiple CMS mitochondria have been found, but their evolutionary relationship has been obscure. We first refined the B. vulgaris reference mitochondrial genome to conduct a more accurate phylogenetic study. We identified mitochondrial single-nucleotide polymorphic sites from 600 B. vulgaris accessions. Principal component analysis, hierarchical clustering analysis, and creation of a phylogenetic tree consistently suggested that B. vulgaris mitochondria can be classified into several groups whose geographical distribution tends to be biased toward either the Atlantic or Mediterranean coasts. We examined the distribution of CMS-associated mitochondrial genes from Owen, E- and G-type CMS mitochondria. About one-third of cultivated beets had Owen-type CMS, which reflects the prevalence of using Owen-type CMS in hybrid breeding. Occurrence frequencies for each of the three CMS genes in wild beet were less than 4%. CMS genes were tightly associated with specific mitochondrial groups that are phylogenetically distinct, suggesting their independent origin. However, homologous sequences of the Owen type CMS gene occurred in several different mitochondrial groups, for which an intricate explanation is necessary. Whereas the origin of cultivated beet had been presumed to be Greece, we found an absence of Owen-type mitochondria in Greek accessions.

Identifiants

pubmed: 39331563
doi: 10.1371/journal.pone.0308551
pii: PONE-D-24-17591
doi:

Substances chimiques

DNA, Mitochondrial 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0308551

Informations de copyright

Copyright: © 2024 Kubota et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Auteurs

Keishi Kubota (K)

Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan.

Mion Oishi (M)

Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan.

Eigo Taniguchi (E)

Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan.

Akiho Akazawa (A)

Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan.

Katsunori Matsui (K)

Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan.

Kazuyoshi Kitazaki (K)

Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan.

Atsushi Toyoda (A)

Advanced Genomics Center, National Institute of Genetics, Mishima, Japan.

Hidehiro Toh (H)

Advanced Genomics Center, National Institute of Genetics, Mishima, Japan.

Hiroaki Matsuhira (H)

Hokkaido Agricultural Research Center, National Agriculture and Food Research Organization, Memuro, Japan.

Yosuke Kuroda (Y)

Hokkaido Agricultural Research Center, National Agriculture and Food Research Organization, Memuro, Japan.

Tomohiko Kubo (T)

Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan.

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Classifications MeSH