Alex Aliper

Affiliations

Insilico Medicine AI Ltd, Masdar City, Abu Dhabi, United Arab Emirates.

Publications (38)

Erratum: Addendum: Molecular Generation for Desired Transcriptome Changes With Adversarial Autoencoders.

Frontiers in pharmacology

Avec: Rim Shayakhmetov , Maksim Kuznetsov , Alexander Zhebrak , Artur Kadurin , Sergey Nikolenko , Alexander Aliper , Daniil Polykovskiy

Quantum computing for near-term applications in generative chemistry and drug discovery.

Drug discovery today

Avec: Alexey Pyrkov , Alex Aliper , Dmitry Bezrukov , Yen-Chu Lin , Daniil Polykovskiy , Petrina Kamya , Feng Ren , Alex Zhavoronkov

Precious1GPT: multimodal transformer-based transfer learning for aging clock development and feature importance analysis for aging and age-related disease target discovery.

Aging

Avec: Anatoly Urban , Denis Sidorenko , Diana Zagirova , Ekaterina Kozlova , Aleksandr Kalashnikov , Stefan Pushkov , Vladimir Naumov , Viktoria Sarkisova , Geoffrey Ho Duen Leung , Hoi Wing Leung , Frank W Pun , Ivan V Ozerov , Alex Aliper , Feng Ren , Alex Zhavoronkov

A comprehensive AI-driven analysis of large-scale omic datasets reveals novel dual-purpose targets for the treatment of cancer and aging.

Aging cell

Avec: Frank W Pun , Geoffrey Ho Duen Leung , Hoi Wing Leung , Jared Rice , Tomas Schmauck-Medina , Sofie Lautrup , Xi Long , Bonnie Hei Man Liu , Chun Wai Wong , Ivan V Ozerov , Alex Aliper , Feng Ren , Ari J Rosenberg , Nishant Agrawal , Evgeny Izumchenko , Evandro F Fang , Alex Zhavoronkov

Identification of Therapeutic Targets for Amyotrophic Lateral Sclerosis Using PandaOmics - An AI-Enabled Biological Target Discovery Platform.

Frontiers in aging neuroscience

Avec: Frank W Pun , Bonnie Hei Man Liu , Xi Long , Hoi Wing Leung , Geoffrey Ho Duen Leung , Quinlan T Mewborne , Junli Gao , Anastasia Shneyderman , Ivan V Ozerov , Ju Wang , Feng Ren , Alexander Aliper , Evelyne Bischof , Evgeny Izumchenko , Xiaoming Guan , Ke Zhang , Bai Lu , Jeffrey D Rothstein , Merit E Cudkowicz , Alex Zhavoronkov

Synthesis and structure-activity optimization of azepane-containing derivatives as PTPN2/PTPN1 inhibitors.

European journal of medicinal chemistry

Avec: Jiamin Zheng , Zhisen Zhang , Xiaoyu Ding , Deheng Sun , Lihua Min , Feng Wang , Sujing Shi , Xin Cai , Man Zhang , Alex Aliper , Feng Ren , Xiao Ding , Alex Zhavoronkov

COSMIC: Molecular Conformation Space Modeling in Internal Coordinates with an Adversarial Framework.

Journal of chemical information and modeling

Avec: Maksim Kuznetsov , Fedor Ryabov , Roman Schutski , Rim Shayakhmetov , Yen-Chu Lin , Alex Aliper , Daniil Polykovskiy

Discovery of Bis-imidazolecarboxamide Derivatives as Novel, Potent, and Selective TNIK Inhibitors for the Treatment of Idiopathic Pulmonary Fibrosis.

Journal of medicinal chemistry

Avec: Vladimir Aladinskiy , Chris Kruse , Luoheng Qin , Eugene Babin , Yaya Fan , Georgiy Andreev , Heng Zhao , Yanyun Fu , Man Zhang , Yan Ivanenkov , Alex Aliper , Alex Zhavoronkov , Feng Ren

Blood Biochemistry Analysis to Detect Smoking Status and Quantify Accelerated Aging in Smokers.

Scientific reports

Avec: Polina Mamoshina , Kirill Kochetov , Franco Cortese , Anna Kovalchuk , Alexander Aliper , Evgeny Putin , Morten Scheibye-Knudsen , Charles R Cantor , Neil M Skjodt , Olga Kovalchuk , Alex Zhavoronkov

Molecular Generation for Desired Transcriptome Changes With Adversarial Autoencoders.

Frontiers in pharmacology

Avec: Rim Shayakhmetov , Maksim Kuznetsov , Alexander Zhebrak , Artur Kadurin , Sergey Nikolenko , Alexander Aliper , Daniil Polykovskiy

COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity.

PLoS computational biology

Avec: Vladimir Naumov , Evgeny Putin , Stefan Pushkov , Ekaterina Kozlova , Konstantin Romantsov , Alexander Kalashnikov , Fedor Galkin , Nina Tihonova , Anastasia Shneyderman , Egor Galkin , Arsenii Zinkevich , Stephanie M Cope , Ramanathan Sethuraman , Tudor I Oprea , Alexander T Pearson , Savas Tay , Nishant Agrawal , Alexey Dubovenko , Quentin Vanhaelen , Ivan Ozerov , Alex Aliper , Evgeny Izumchenko , Alex Zhavoronkov

Hallmarks of aging-based dual-purpose disease and age-associated targets predicted using PandaOmics AI-powered discovery engine.

Aging

Avec: Frank W Pun , Geoffrey Ho Duen Leung , Hoi Wing Leung , Bonnie Hei Man Liu , Xi Long , Ivan V Ozerov , Ju Wang , Feng Ren , Alexander Aliper , Evgeny Izumchenko , Alexey Moskalev , João Pedro de Magalhães , Alex Zhavoronkov

Identification of dual-purpose therapeutic targets implicated in aging and glioblastoma multiforme using PandaOmics - an AI-enabled biological target discovery platform.

Aging

Avec: Andrea Olsen , Zachary Harpaz , Christopher Ren , Anastasia Shneyderman , Alexander Veviorskiy , Maria Dralkina , Simon Konnov , Olga Shcheglova , Frank W Pun , Geoffrey Ho Duen Leung , Hoi Wing Leung , Ivan V Ozerov , Alex Aliper , Mikhail Korzinkin , Alex Zhavoronkov

Discovery of novel and selective SIK2 inhibitors by the application of AlphaFold structures and generative models.

Bioorganic & medicinal chemistry

Avec: Wei Zhu , Xiaosong Liu , Qi Li , Feng Gao , Tingting Liu , Xiaojing Chen , Man Zhang , Alex Aliper , Feng Ren , Xiao Ding , Alex Zhavoronkov

The Hitchhiker's Guide to Deep Learning Driven Generative Chemistry.

ACS medicinal chemistry letters

Avec: Yan Ivanenkov , Bogdan Zagribelnyy , Alex Malyshev , Sergei Evteev , Victor Terentiev , Petrina Kamya , Dmitry Bezrukov , Alex Aliper , Feng Ren , Alex Zhavoronkov

Discovery of Novel and Potent Prolyl Hydroxylase Domain-Containing Protein (PHD) Inhibitors for The Treatment of Anemia.

Journal of medicinal chemistry

Avec: Jianyu Xu , Xiaoyu Ding , Yanyun Fu , Qingyuan Meng , Ling Wang , Man Zhang , Chenxi Xu , Shan Chen , Alex Aliper , Feng Ren , Alex Zhavoronkov , Xiao Ding

Discovery of 1(2H)-phthalazinone and 1(2H)-isoquinolinone derivatives as potent hematopoietic progenitor kinase 1 (HPK1) inhibitors.

European journal of medicinal chemistry

Avec: Jingjing Peng , Xiaoyu Ding , Pei-Yu Shih , Qingyuan Meng , Xiao Ding , Man Zhang , Alex Aliper , Feng Ren , Hongfu Lu , Alex Zhavoronkov

Deep learning enables rapid identification of potent DDR1 kinase inhibitors.

Nature biotechnology

Avec: Alex Zhavoronkov , Yan A Ivanenkov , Alex Aliper , Mark S Veselov , Vladimir A Aladinskiy , Anastasiya V Aladinskaya , Victor A Terentiev , Daniil A Polykovskiy , Maksim D Kuznetsov , Arip Asadulaev , Yury Volkov , Artem Zholus , Rim R Shayakhmetov , Alexander Zhebrak , Lidiya I Minaeva , Bogdan A Zagribelnyy , Lennart H Lee , Richard Soll , David Madge , Li Xing , Tao Guo , Alán Aspuru-Guzik

Evaluation of the geroprotective effects of withaferin A in

Aging

Avec: Liubov Koval , Nadezhda Zemskaya , Alexander Aliper , Alex Zhavoronkov , Alexey Moskalev

Biomedical generative pre-trained based transformer language model for age-related disease target discovery.

Aging

Avec: Diana Zagirova , Stefan Pushkov , Geoffrey Ho Duen Leung , Bonnie Hei Man Liu , Anatoly Urban , Denis Sidorenko , Aleksandr Kalashnikov , Ekaterina Kozlova , Vladimir Naumov , Frank W Pun , Ivan V Ozerov , Alex Aliper , Alex Zhavoronkov

AlphaFold accelerates artificial intelligence powered drug discovery: efficient discovery of a novel CDK20 small molecule inhibitor.

Chemical science

Avec: Feng Ren , Xiao Ding , Min Zheng , Mikhail Korzinkin , Xin Cai , Wei Zhu , Alexey Mantsyzov , Alex Aliper , Vladimir Aladinskiy , Zhongying Cao , Shanshan Kong , Xi Long , Bonnie Hei Man Liu , Yingtao Liu , Vladimir Naumov , Anastasia Shneyderman , Ivan V Ozerov , Ju Wang , Frank W Pun , Daniil A Polykovskiy , Chong Sun , Michael Levitt , Alán Aspuru-Guzik , Alex Zhavoronkov

High-confidence cancer patient stratification through multiomics investigation of DNA repair disorders.

Cell death & disease

Avec: Garik V Mkrtchyan , Alexander Veviorskiy , Evgeny Izumchenko , Anastasia Shneyderman , Frank W Pun , Ivan V Ozerov , Alex Aliper , Alex Zhavoronkov , Morten Scheibye-Knudsen

Chemistry42: An AI-Driven Platform for Molecular Design and Optimization.

Journal of chemical information and modeling

Avec: Yan A Ivanenkov , Daniil Polykovskiy , Dmitry Bezrukov , Bogdan Zagribelnyy , Vladimir Aladinskiy , Petrina Kamya , Alex Aliper , Feng Ren , Alex Zhavoronkov

A small-molecule TNIK inhibitor targets fibrosis in preclinical and clinical models.

Nature biotechnology

Avec: Feng Ren , Alex Aliper , Jian Chen , Heng Zhao , Sujata Rao , Christoph Kuppe , Ivan V Ozerov , Man Zhang , Klaus Witte , Chris Kruse , Vladimir Aladinskiy , Yan Ivanenkov , Daniil Polykovskiy , Yanyun Fu , Eugene Babin , Junwen Qiao , Xing Liang , Zhenzhen Mou , Hui Wang , Frank W Pun , Pedro Torres Ayuso , Alexander Veviorskiy , Dandan Song , Sang Liu , Bei Zhang , Vladimir Naumov , Xiaoqiang Ding , Andrey Kukharenko , Evgeny Izumchenko , Alex Zhavoronkov

PandaOmics: An AI-Driven Platform for Therapeutic Target and Biomarker Discovery.

Journal of chemical information and modeling

Avec: Petrina Kamya , Ivan V Ozerov , Frank W Pun , Kyle Tretina , Tatyana Fokina , Shan Chen , Vladimir Naumov , Xi Long , Sha Lin , Mikhail Korzinkin , Daniil Polykovskiy , Alex Aliper , Feng Ren , Alex Zhavoronkov

TNIK's emerging role in cancer, metabolism, and age-related diseases.

Trends in pharmacological sciences

Avec: Collin Y Ewald , Fadi E Pulous , Sarah Wing Yan Lok , Frank W Pun , Alex Aliper , Feng Ren , Alex Zhavoronkov

Precious2GPT: the combination of multiomics pretrained transformer and conditional diffusion for artificial multi-omics multi-species multi-tissue sample generation.

npj aging

Avec: Denis Sidorenko , Stefan Pushkov , Akhmed Sakip , Geoffrey Ho Duen Leung , Sarah Wing Yan Lok , Anatoly Urban , Diana Zagirova , Alexander Veviorskiy , Nina Tihonova , Aleksandr Kalashnikov , Ekaterina Kozlova , Vladimir Naumov , Frank W Pun , Alex Aliper , Feng Ren , Alex Zhavoronkov

Human Gut Microbiome Aging Clock Based on Taxonomic Profiling and Deep Learning.

iScience

Avec: Fedor Galkin , Polina Mamoshina , Alex Aliper , Evgeny Putin , Vladimir Moskalev , Vadim N Gladyshev , Alex Zhavoronkov

Biohorology and biomarkers of aging: Current state-of-the-art, challenges and opportunities.

Ageing research reviews

Avec: Fedor Galkin , Polina Mamoshina , Alex Aliper , João Pedro de Magalhães , Vadim N Gladyshev , Alex Zhavoronkov

Artificial intelligence for aging and longevity research: Recent advances and perspectives.

Ageing research reviews

Avec: Alex Zhavoronkov , Polina Mamoshina , Quentin Vanhaelen , Morten Scheibye-Knudsen , Alexey Moskalev , Alex Aliper

Exploring the Advantages of Quantum Generative Adversarial Networks in Generative Chemistry.

Journal of chemical information and modeling

Avec: Po-Yu Kao , Ya-Chu Yang , Wei-Yin Chiang , Jen-Yueh Hsiao , Yudong Cao , Alex Aliper , Feng Ren , Alán Aspuru-Guzik , Alex Zhavoronkov , Min-Hsiu Hsieh , Yen-Chu Lin

Prediction of Clinical Trials Outcomes Based on Target Choice and Clinical Trial Design with Multi-Modal Artificial Intelligence.

Clinical pharmacology and therapeutics

Avec: Alex Aliper , Roman Kudrin , Daniil Polykovskiy , Petrina Kamya , Elena Tutubalina , Shan Chen , Feng Ren , Alex Zhavoronkov

Discovery of novel MAT2A inhibitors by an allosteric site-compatible fragment growing approach.

Bioorganic & medicinal chemistry

Avec: Feng Gao , Xiaoyu Ding , Zhongying Cao , Wei Zhu , Yaya Fan , Barbara Steurer , Hailong Wang , Xin Cai , Man Zhang , Alex Aliper , Feng Ren , Xiao Ding , Alex Zhavoronkov

Discovery of Tetrahydropyrazolopyrazine Derivatives as Potent and Selective MYT1 Inhibitors for the Treatment of Cancer.

Journal of medicinal chemistry

Avec: Yazhou Wang , Chao Wang , Tingting Liu , Hongyun Qi , Shan Chen , Xin Cai , Man Zhang , Alex Aliper , Feng Ren , Xiao Ding , Alex Zhavoronkov

Discovery of 3-hydroxymethyl-azetidine derivatives as potent polymerase theta inhibitors.

Bioorganic & medicinal chemistry

Avec: Yazhou Wang , Chao Wang , Jinxin Liu , Deheng Sun , Fanye Meng , Man Zhang , Alex Aliper , Feng Ren , Alex Zhavoronkov , Xiao Ding

Discovery of macrocyclic CDK2/4/6 inhibitors with improved potency and DMPK properties through a highly efficient macrocyclic drug design platform.

Bioorganic chemistry

Avec: Fanye Meng , Jinxin Liu , Zhongying Cao , Jiaojiao Yu , Barbara Steurer , Yilin Yang , Yazhou Wang , Xin Cai , Man Zhang , Feng Ren , Alex Aliper , Xiao Ding , Alex Zhavoronkov

nach0: multimodal natural and chemical languages foundation model.

Chemical science

Avec: Micha Livne , Zulfat Miftahutdinov , Elena Tutubalina , Maksim Kuznetsov , Daniil Polykovskiy , Annika Brundyn , Aastha Jhunjhunwala , Anthony Costa , Alex Aliper , Alán Aspuru-Guzik , Alex Zhavoronkov

Discovery of a Novel and Potent Cyclin-Dependent Kinase 8/19 (CDK8/19) Inhibitor for the Treatment of Cancer.

Journal of medicinal chemistry

Avec: Jianyu Xu , Hongyun Qi , Zhen Wang , Ling Wang , Barbara Steurer , Xin Cai , Jinxin Liu , Alex Aliper , Man Zhang , Feng Ren , Alex Zhavoronkov , Xiao Ding

Réseau de co-auteurs

Alex Zhavoronkov 35 collaborations

Feng Ren 24 collaborations

Frank W Pun 12 collaborations

Man Zhang 11 collaborations

Ivan V Ozerov 10 collaborations

Xiao Ding 10 collaborations

Daniil Polykovskiy 9 collaborations

Vladimir Naumov 7 collaborations

Geoffrey Ho Duen Leung 7 collaborations

Alexander Aliper 6 collaborations

Evgeny Izumchenko 6 collaborations

Xin Cai 6 collaborations

Petrina Kamya 5 collaborations

Hoi Wing Leung 5 collaborations

Xi Long 5 collaborations

Bonnie Hei Man Liu 5 collaborations

Anastasia Shneyderman 5 collaborations

Maksim Kuznetsov 4 collaborations

Ekaterina Kozlova 4 collaborations

Stefan Pushkov 4 collaborations

Xiaoyu Ding 4 collaborations

Vladimir Aladinskiy 4 collaborations

Polina Mamoshina 4 collaborations

Alexander Veviorskiy 4 collaborations

Shan Chen 4 collaborations

Alán Aspuru-Guzik 4 collaborations

Rim Shayakhmetov 3 collaborations

Alexander Zhebrak 3 collaborations

Dmitry Bezrukov 3 collaborations

Yen-Chu Lin 3 collaborations

Anatoly Urban 3 collaborations

Denis Sidorenko 3 collaborations

Diana Zagirova 3 collaborations

Aleksandr Kalashnikov 3 collaborations

Ju Wang 3 collaborations

Yanyun Fu 3 collaborations

Yan Ivanenkov 3 collaborations

Evgeny Putin 3 collaborations

Morten Scheibye-Knudsen 3 collaborations

Fedor Galkin 3 collaborations

Alexey Moskalev 3 collaborations

Mikhail Korzinkin 3 collaborations

Wei Zhu 3 collaborations

Zhongying Cao 3 collaborations

Barbara Steurer 3 collaborations

Yazhou Wang 3 collaborations

Jinxin Liu 3 collaborations

Artur Kadurin 2 collaborations

Sergey Nikolenko 2 collaborations

Nishant Agrawal 2 collaborations

Deheng Sun 2 collaborations

Chris Kruse 2 collaborations

Eugene Babin 2 collaborations

Yaya Fan 2 collaborations

Heng Zhao 2 collaborations

Nina Tihonova 2 collaborations

Quentin Vanhaelen 2 collaborations

João Pedro de Magalhães 2 collaborations

Feng Gao 2 collaborations

Tingting Liu 2 collaborations

Bogdan Zagribelnyy 2 collaborations

Jianyu Xu 2 collaborations

Qingyuan Meng 2 collaborations

Ling Wang 2 collaborations

Yan A Ivanenkov 2 collaborations

Daniil A Polykovskiy 2 collaborations

Sarah Wing Yan Lok 2 collaborations

Vadim N Gladyshev 2 collaborations

Elena Tutubalina 2 collaborations

Chao Wang 2 collaborations

Hongyun Qi 2 collaborations

Fanye Meng 2 collaborations

Alexey Pyrkov 1 collaboration

Viktoria Sarkisova 1 collaboration

Jared Rice 1 collaboration

Tomas Schmauck-Medina 1 collaboration

Sofie Lautrup 1 collaboration

Chun Wai Wong 1 collaboration

Ari J Rosenberg 1 collaboration

Evandro F Fang 1 collaboration

Quinlan T Mewborne 1 collaboration

Junli Gao 1 collaboration

Evelyne Bischof 1 collaboration

Xiaoming Guan 1 collaboration

Ke Zhang 1 collaboration

Bai Lu 1 collaboration

Jeffrey D Rothstein 1 collaboration

Merit E Cudkowicz 1 collaboration

Jiamin Zheng 1 collaboration

Zhisen Zhang 1 collaboration

Lihua Min 1 collaboration

Feng Wang 1 collaboration

Sujing Shi 1 collaboration

Fedor Ryabov 1 collaboration

Roman Schutski 1 collaboration

Luoheng Qin 1 collaboration

Georgiy Andreev 1 collaboration

Kirill Kochetov 1 collaboration

Franco Cortese 1 collaboration

Anna Kovalchuk 1 collaboration

Charles R Cantor 1 collaboration

Neil M Skjodt 1 collaboration

Olga Kovalchuk 1 collaboration

Konstantin Romantsov 1 collaboration

Alexander Kalashnikov 1 collaboration

Egor Galkin 1 collaboration

Arsenii Zinkevich 1 collaboration

Stephanie M Cope 1 collaboration

Ramanathan Sethuraman 1 collaboration

Tudor I Oprea 1 collaboration

Alexander T Pearson 1 collaboration

Savas Tay 1 collaboration

Alexey Dubovenko 1 collaboration

Ivan Ozerov 1 collaboration

Andrea Olsen 1 collaboration

Zachary Harpaz 1 collaboration

Christopher Ren 1 collaboration

Maria Dralkina 1 collaboration

Simon Konnov 1 collaboration

Olga Shcheglova 1 collaboration

Xiaosong Liu 1 collaboration

Qi Li 1 collaboration

Xiaojing Chen 1 collaboration

Alex Malyshev 1 collaboration

Sergei Evteev 1 collaboration

Victor Terentiev 1 collaboration

Chenxi Xu 1 collaboration

Jingjing Peng 1 collaboration

Pei-Yu Shih 1 collaboration

Hongfu Lu 1 collaboration

Mark S Veselov 1 collaboration

Vladimir A Aladinskiy 1 collaboration

Anastasiya V Aladinskaya 1 collaboration

Victor A Terentiev 1 collaboration

Maksim D Kuznetsov 1 collaboration

Arip Asadulaev 1 collaboration

Yury Volkov 1 collaboration

Artem Zholus 1 collaboration

Rim R Shayakhmetov 1 collaboration

Lidiya I Minaeva 1 collaboration

Bogdan A Zagribelnyy 1 collaboration

Lennart H Lee 1 collaboration

Richard Soll 1 collaboration

David Madge 1 collaboration

Li Xing 1 collaboration

Tao Guo 1 collaboration

Liubov Koval 1 collaboration

Nadezhda Zemskaya 1 collaboration

Min Zheng 1 collaboration

Alexey Mantsyzov 1 collaboration

Shanshan Kong 1 collaboration

Yingtao Liu 1 collaboration

Chong Sun 1 collaboration

Michael Levitt 1 collaboration

Garik V Mkrtchyan 1 collaboration

Jian Chen 1 collaboration

Sujata Rao 1 collaboration

Christoph Kuppe 1 collaboration

Klaus Witte 1 collaboration

Junwen Qiao 1 collaboration

Xing Liang 1 collaboration

Zhenzhen Mou 1 collaboration

Hui Wang 1 collaboration

Pedro Torres Ayuso 1 collaboration

Dandan Song 1 collaboration

Sang Liu 1 collaboration

Bei Zhang 1 collaboration

Xiaoqiang Ding 1 collaboration

Andrey Kukharenko 1 collaboration

Kyle Tretina 1 collaboration

Tatyana Fokina 1 collaboration

Sha Lin 1 collaboration

Collin Y Ewald 1 collaboration

Fadi E Pulous 1 collaboration

Akhmed Sakip 1 collaboration

Vladimir Moskalev 1 collaboration

Po-Yu Kao 1 collaboration

Ya-Chu Yang 1 collaboration

Wei-Yin Chiang 1 collaboration

Jen-Yueh Hsiao 1 collaboration

Yudong Cao 1 collaboration

Min-Hsiu Hsieh 1 collaboration

Roman Kudrin 1 collaboration

Hailong Wang 1 collaboration

Jiaojiao Yu 1 collaboration

Yilin Yang 1 collaboration

Micha Livne 1 collaboration

Zulfat Miftahutdinov 1 collaboration

Annika Brundyn 1 collaboration

Aastha Jhunjhunwala 1 collaboration

Anthony Costa 1 collaboration

Zhen Wang 1 collaboration