Daniel Trcka

Affiliations

Centre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.

Publications (11)

Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell.

Nature

Avec: Arshad Ayyaz , Sandeep Kumar , Bruno Sangiorgi , Bibaswan Ghoshal , Jessica Gosio , Shaida Ouladan , Mardi Fink , Seda Barutcu , Daniel Trcka , Jess Shen , Kin Chan , Jeffrey L Wrana , Alex Gregorieff

A multiplexed, next generation sequencing platform for high-throughput detection of SARS-CoV-2.

Nature communications

Avec: Marie-Ming Aynaud , J Javier Hernandez , Seda Barutcu , Ulrich Braunschweig , Kin Chan , Joel D Pearson , Daniel Trcka , Suzanna L Prosser , Jaeyoun Kim , Miriam Barrios-Rodiles , Mark Jen , Siyuan Song , Jess Shen , Christine Bruce , Bryn Hazlett , Susan Poutanen , Liliana Attisano , Rod Bremner , Benjamin J Blencowe , Tony Mazzulli , Hong Han , Laurence Pelletier , Jeffrey L Wrana

Loss of Epigenetic Regulation Disrupts Lineage Integrity, Induces Aberrant Alveogenesis, and Promotes Breast Cancer.

Cancer discovery

Avec: Ellen Langille , Khalid N Al-Zahrani , Zhibo Ma , Minggao Liang , Liis Uuskula-Reimand , Roderic Espin , Katie Teng , Ahmad Malik , Helga Bergholtz , Samah El Ghamrasni , Somaieh Afiuni-Zadeh , Ricky Tsai , Sana Alvi , Andrew Elia , YiQing Lü , Robin H Oh , Katelyn J Kozma , Daniel Trcka , Masahiro Narimatsu , Jeff C Liu , Thomas Nguyen , Seda Barutcu , Sampath K Loganathan , Rod Bremner , Gary D Bader , Sean E Egan , David W Cescon , Therese Sørlie , Jeffrey L Wrana , Hartland W Jackson , Michael D Wilson , Agnieszka K Witkiewicz , Erik S Knudsen , Miguel Angel Pujana , Geoffrey M Wahl , Daniel Schramek

Translational feasibility and efficacy of nasal photodynamic disinfection of SARS-CoV-2.

Scientific reports

Avec: Layla Pires , Brian C Wilson , Rod Bremner , Amanda Lang , Jeremie Larouche , Ryan McDonald , Joel D Pearson , Daniel Trcka , Jeff Wrana , James Wu , Cari M Whyne

Robust production of uniform human cerebral organoids from pluripotent stem cells.

Life science alliance

Avec: Adam A Sivitilli , Jessica T Gosio , Bibaswan Ghoshal , Alesya Evstratova , Daniel Trcka , Parisa Ghiasi , J Javier Hernandez , Jean Martin Beaulieu , Jeffrey L Wrana , Liliana Attisano

Cell competition during reprogramming gives rise to dominant clones.

Science (New York, N.Y.)

Avec: Nika Shakiba , Ahmed Fahmy , Gowtham Jayakumaran , Sophie McGibbon , Laurent David , Daniel Trcka , Judith Elbaz , Mira C Puri , Andras Nagy , Derek van der Kooy , Sidhartha Goyal , Jeffrey L Wrana , Peter W Zandstra

A glucose meter interface for point-of-care gene circuit-based diagnostics.

Nature communications

Avec: Evan Amalfitano , Margot Karlikow , Masoud Norouzi , Katariina Jaenes , Seray Cicek , Fahim Masum , Peivand Sadat Mousavi , Yuxiu Guo , Laura Tang , Andrew Sydor , Duo Ma , Joel D Pearson , Daniel Trcka , Mathieu Pinette , Aruna Ambagala , Shawn Babiuk , Bradley Pickering , Jeff Wrana , Rod Bremner , Tony Mazzulli , David Sinton , John H Brumell , Alexander A Green , Keith Pardee

LINE1 and PRC2 control nucleolar organization and repression of the 8C state in human ESCs.

Developmental cell

Avec: Juan Zhang , Lamisa Ataei , Kirti Mittal , Liang Wu , Lauren Caldwell , Linh Huynh , Shahil Sarajideen , Kevin Tse , Marie-Michelle Simon , Md Abdul Mazid , David P Cook , Daniel Trcka , Tony Kwan , Michael M Hoffman , Jeffrey L Wrana , Miguel A Esteban , Miguel Ramalho-Santos

Comparison of SARS-CoV-2 indirect and direct RT-qPCR detection methods.

Virology journal

Avec: Joel D Pearson , Daniel Trcka , Suying Lu , Sharon J Hyduk , Mark Jen , Marie-Ming Aynaud , J Javier Hernández , Philippos Peidis , Miriam Barrios-Rodiles , Kin Chan , Jim Woodgett , Tony Mazzulli , Liliana Attisano , Laurence Pelletier , Myron I Cybulsky , Jeffrey L Wrana , Rod Bremner

A noncoding single-nucleotide polymorphism at 8q24 drives

Science (New York, N.Y.)

Avec: Connor Yanchus , Kristen L Drucker , Thomas M Kollmeyer , Ricky Tsai , Warren Winick-Ng , Minggao Liang , Ahmad Malik , Judy Pawling , Silvana B De Lorenzo , Asma Ali , Paul A Decker , Matt L Kosel , Arijit Panda , Khalid N Al-Zahrani , Lingyan Jiang , Jared W L Browning , Chris Lowden , Michael Geuenich , J Javier Hernandez , Jessica T Gosio , Musaddeque Ahmed , Sampath Kumar Loganathan , Jacob Berman , Daniel Trcka , Kulandaimanuvel Antony Michealraj , Jerome Fortin , Brittany Carson , Ethan W Hollingsworth , Sandra Jacinto , Parisa Mazrooei , Lily Zhou , Andrew Elia , Mathieu Lupien , Housheng Hansen He , Daniel J Murphy , Liguo Wang , Alexej Abyzov , James W Dennis , Philipp G Maass , Kieran Campbell , Michael D Wilson , Daniel H Lachance , Margaret Wrensch , John Wiencke , Tak Mak , Len A Pennacchio , Diane E Dickel , Axel Visel , Jeffrey Wrana , Michael D Taylor , Gelareh Zadeh , Peter Dirks , Jeanette E Eckel-Passow , Liliana Attisano , Ana Pombo , Cristiane M Ida , Evgeny Z Kvon , Robert B Jenkins , Daniel Schramek

Absolute scaling of single-cell transcriptomes identifies pervasive hypertranscription in adult stem and progenitor cells.

Cell reports

Avec: Yun-Kyo Kim , Brandon Cho , David P Cook , Dan Trcka , Jeffrey L Wrana , Miguel Ramalho-Santos

Réseau de co-auteurs

Jeffrey L Wrana 8 collaborations

Rod Bremner 5 collaborations

Joel D Pearson 4 collaborations

Liliana Attisano 4 collaborations

Seda Barutcu 3 collaborations

Kin Chan 3 collaborations

J Javier Hernandez 3 collaborations

Tony Mazzulli 3 collaborations

Bibaswan Ghoshal 2 collaborations

Jess Shen 2 collaborations

Marie-Ming Aynaud 2 collaborations

Miriam Barrios-Rodiles 2 collaborations

Mark Jen 2 collaborations

Laurence Pelletier 2 collaborations

Khalid N Al-Zahrani 2 collaborations

Minggao Liang 2 collaborations

Ahmad Malik 2 collaborations

Ricky Tsai 2 collaborations

Andrew Elia 2 collaborations

Michael D Wilson 2 collaborations

Daniel Schramek 2 collaborations

Jeff Wrana 2 collaborations

Jessica T Gosio 2 collaborations

David P Cook 2 collaborations

Miguel Ramalho-Santos 2 collaborations

Arshad Ayyaz 1 collaboration

Sandeep Kumar 1 collaboration

Bruno Sangiorgi 1 collaboration

Jessica Gosio 1 collaboration

Shaida Ouladan 1 collaboration

Mardi Fink 1 collaboration

Alex Gregorieff 1 collaboration

Ulrich Braunschweig 1 collaboration

Suzanna L Prosser 1 collaboration

Jaeyoun Kim 1 collaboration

Siyuan Song 1 collaboration

Christine Bruce 1 collaboration

Bryn Hazlett 1 collaboration

Susan Poutanen 1 collaboration

Benjamin J Blencowe 1 collaboration

Hong Han 1 collaboration

Ellen Langille 1 collaboration

Zhibo Ma 1 collaboration

Liis Uuskula-Reimand 1 collaboration

Roderic Espin 1 collaboration

Katie Teng 1 collaboration

Helga Bergholtz 1 collaboration

Samah El Ghamrasni 1 collaboration

Somaieh Afiuni-Zadeh 1 collaboration

Sana Alvi 1 collaboration

YiQing Lü 1 collaboration

Robin H Oh 1 collaboration

Katelyn J Kozma 1 collaboration

Masahiro Narimatsu 1 collaboration

Jeff C Liu 1 collaboration

Thomas Nguyen 1 collaboration

Sampath K Loganathan 1 collaboration

Gary D Bader 1 collaboration

Sean E Egan 1 collaboration

David W Cescon 1 collaboration

Therese Sørlie 1 collaboration

Hartland W Jackson 1 collaboration

Agnieszka K Witkiewicz 1 collaboration

Erik S Knudsen 1 collaboration

Miguel Angel Pujana 1 collaboration

Geoffrey M Wahl 1 collaboration

Layla Pires 1 collaboration

Brian C Wilson 1 collaboration

Amanda Lang 1 collaboration

Jeremie Larouche 1 collaboration

Ryan McDonald 1 collaboration

James Wu 1 collaboration

Cari M Whyne 1 collaboration

Adam A Sivitilli 1 collaboration

Alesya Evstratova 1 collaboration

Parisa Ghiasi 1 collaboration

Jean Martin Beaulieu 1 collaboration

Nika Shakiba 1 collaboration

Ahmed Fahmy 1 collaboration

Gowtham Jayakumaran 1 collaboration

Sophie McGibbon 1 collaboration

Laurent David 1 collaboration

Judith Elbaz 1 collaboration

Mira C Puri 1 collaboration

Andras Nagy 1 collaboration

Derek van der Kooy 1 collaboration

Sidhartha Goyal 1 collaboration

Peter W Zandstra 1 collaboration

Evan Amalfitano 1 collaboration

Margot Karlikow 1 collaboration

Masoud Norouzi 1 collaboration

Katariina Jaenes 1 collaboration

Seray Cicek 1 collaboration

Fahim Masum 1 collaboration

Peivand Sadat Mousavi 1 collaboration

Yuxiu Guo 1 collaboration

Laura Tang 1 collaboration

Andrew Sydor 1 collaboration

Duo Ma 1 collaboration

Mathieu Pinette 1 collaboration

Aruna Ambagala 1 collaboration

Shawn Babiuk 1 collaboration

Bradley Pickering 1 collaboration

David Sinton 1 collaboration

John H Brumell 1 collaboration

Alexander A Green 1 collaboration

Keith Pardee 1 collaboration

Juan Zhang 1 collaboration

Lamisa Ataei 1 collaboration

Kirti Mittal 1 collaboration

Liang Wu 1 collaboration

Lauren Caldwell 1 collaboration

Linh Huynh 1 collaboration

Shahil Sarajideen 1 collaboration

Kevin Tse 1 collaboration

Marie-Michelle Simon 1 collaboration

Md Abdul Mazid 1 collaboration

Tony Kwan 1 collaboration

Michael M Hoffman 1 collaboration

Miguel A Esteban 1 collaboration

Suying Lu 1 collaboration

Sharon J Hyduk 1 collaboration

J Javier Hernández 1 collaboration

Philippos Peidis 1 collaboration

Jim Woodgett 1 collaboration

Myron I Cybulsky 1 collaboration

Connor Yanchus 1 collaboration

Kristen L Drucker 1 collaboration

Thomas M Kollmeyer 1 collaboration

Warren Winick-Ng 1 collaboration

Judy Pawling 1 collaboration

Silvana B De Lorenzo 1 collaboration

Asma Ali 1 collaboration

Paul A Decker 1 collaboration

Matt L Kosel 1 collaboration

Arijit Panda 1 collaboration

Lingyan Jiang 1 collaboration

Jared W L Browning 1 collaboration

Chris Lowden 1 collaboration

Michael Geuenich 1 collaboration

Musaddeque Ahmed 1 collaboration

Sampath Kumar Loganathan 1 collaboration

Jacob Berman 1 collaboration

Kulandaimanuvel Antony Michealraj 1 collaboration

Jerome Fortin 1 collaboration

Brittany Carson 1 collaboration

Ethan W Hollingsworth 1 collaboration

Sandra Jacinto 1 collaboration

Parisa Mazrooei 1 collaboration

Lily Zhou 1 collaboration

Mathieu Lupien 1 collaboration

Housheng Hansen He 1 collaboration

Daniel J Murphy 1 collaboration

Liguo Wang 1 collaboration

Alexej Abyzov 1 collaboration

James W Dennis 1 collaboration

Philipp G Maass 1 collaboration

Kieran Campbell 1 collaboration

Daniel H Lachance 1 collaboration

Margaret Wrensch 1 collaboration

John Wiencke 1 collaboration

Tak Mak 1 collaboration

Len A Pennacchio 1 collaboration

Diane E Dickel 1 collaboration

Axel Visel 1 collaboration

Jeffrey Wrana 1 collaboration

Michael D Taylor 1 collaboration

Gelareh Zadeh 1 collaboration

Peter Dirks 1 collaboration

Jeanette E Eckel-Passow 1 collaboration

Ana Pombo 1 collaboration

Cristiane M Ida 1 collaboration

Evgeny Z Kvon 1 collaboration

Robert B Jenkins 1 collaboration

Yun-Kyo Kim 1 collaboration

Brandon Cho 1 collaboration

Dan Trcka 1 collaboration