Jan Lipfert

Affiliations

Department of Physics and Center for Nanoscience, LMU Munich, Amalienstrasse 54, 80799 Munich, Germany.

ORCID: http://orcid.org/0000-0003-3613-7896

Publications (30)

Compensatory Mechanisms in Temperature Dependence of DNA Double Helical Structure: Bending and Elongation.

Journal of chemical theory and computation

Avec: Hana Dohnalová , Tomáš Dršata , Jiří Šponer , Martin Zacharias , Jan Lipfert , Filip Lankaš

A tethered ligand assay to probe SARS-CoV-2:ACE2 interactions.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Magnus S Bauer , Sophia Gruber , Adina Hausch , Priscila S F C Gomes , Lukas F Milles , Thomas Nicolaus , Leonard C Schendel , Pilar López Navajas , Erik Procko , Daniel Lietha , Marcelo C R Melo , Rafael C Bernardi , Hermann E Gaub , Jan Lipfert

Single-molecule force stability of the SARS-CoV-2-ACE2 interface in variants-of-concern.

Nature nanotechnology

Avec: Magnus S Bauer , Sophia Gruber , Adina Hausch , Marcelo C R Melo , Priscila S F C Gomes , Thomas Nicolaus , Lukas F Milles , Hermann E Gaub , Rafael C Bernardi , Jan Lipfert

Epigenetic histone modifications H3K36me3 and H4K5/8/12/16ac induce open polynucleosome conformations via different mechanisms.

Journal of molecular biology

Avec: Yi-Yun Lin , Peter Müller , Evdoxia Karagianni , Nicola Hepp , Felix Mueller-Planitz , Willem Vanderlinden , Jan Lipfert

A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint.

Data in brief

Avec: Willem Vanderlinden , Pauline J Kolbeck , Franziska Kriegel , Philipp U Walker , Jan Lipfert

Ru(TAP)32+ uses multivalent binding to accelerate and constrain photo-adduct formation on DNA.

Chemical communications (Cambridge, England)

Avec: Willem Vanderlinden , Pauline J Kolbeck , Wout Frederickx , Sebastian F Konrad , Thomas Nicolaus , Carola Lampe , Alexander S Urban , Cécile Moucheron , Jan Lipfert

Multiplexed protein force spectroscopy reveals equilibrium protein folding dynamics and the low-force response of von Willebrand factor.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Achim Löf , Philipp U Walker , Steffen M Sedlak , Sophia Gruber , Tobias Obser , Maria A Brehm , Martin Benoit , Jan Lipfert

Dynamics of the Buckling Transition in Double-Stranded DNA and RNA.

Biophysical journal

Avec: Katharina Ott , Linda Martini , Jan Lipfert , Ulrich Gerland

Cellular and Molecular Probing of Intact Human Organs.

Cell

Avec: Shan Zhao , Mihail Ivilinov Todorov , Ruiyao Cai , Rami Ai -Maskari , Hanno Steinke , Elisabeth Kemter , Hongcheng Mai , Zhouyi Rong , Martin Warmer , Karen Stanic , Oliver Schoppe , Johannes Christian Paetzold , Benno Gesierich , Milagros N Wong , Tobias B Huber , Marco Duering , Oliver Thomas Bruns , Bjoern Menze , Jan Lipfert , Victor G Puelles , Eckhard Wolf , Ingo Bechmann , Ali Ertürk

The free energy landscape of retroviral integration.

Nature communications

Avec: Willem Vanderlinden , Tine Brouns , Philipp U Walker , Pauline J Kolbeck , Lukas F Milles , Wolfgang Ott , Philipp C Nickels , Zeger Debyser , Jan Lipfert

The Dissociation Rate of Acetylacetonate Ligands Governs the Size of Ferrimagnetic Zinc Ferrite Nanocubes.

ACS applied materials & interfaces

Avec: Aidin Lak , Tamara Kahmann , Simon Jakob Schaper , Jaroslava Obel , Frank Ludwig , Peter Müller-Buschbaum , Jan Lipfert

A High-throughput Pipeline to Determine DNA and Nucleosome Conformations by AFM Imaging.

Bio-protocol

Avec: Sebastian F Konrad , Willem Vanderlinden , Jan Lipfert

DNA fluctuations reveal the size and dynamics of topological domains.

PNAS nexus

Avec: Willem Vanderlinden , Enrico Skoruppa , Pauline J Kolbeck , Enrico Carlon , Jan Lipfert

Cooperative dynamics of DNA-grafted magnetic nanoparticles optimize magnetic biosensing and coupling to DNA origami.

Nanoscale

Avec: Aidin Lak , Yihao Wang , Pauline J Kolbeck , Christoph Pauer , Mohammad Suman Chowdhury , Marco Cassani , Frank Ludwig , Thilo Viereck , Florian Selbach , Philip Tinnefeld , Meinhard Schilling , Tim Liedl , Joe Tavacoli , Jan Lipfert

The structural ensemble of a Holliday junction determined by X-ray scattering interference.

Nucleic acids research

Avec: Thomas Zettl , Xuesong Shi , Steve Bonilla , Steffen M Sedlak , Jan Lipfert , Daniel Herschlag

Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold.

Nucleic acids research

Avec: Pauline J Kolbeck , Willem Vanderlinden , Gerd Gemmecker , Christian Gebhardt , Martin Lehmann , Aidin Lak , Thomas Nicolaus , Thorben Cordes , Jan Lipfert

High-throughput AFM analysis reveals unwrapping pathways of H3 and CENP-A nucleosomes.

Nanoscale

Avec: Sebastian F Konrad , Willem Vanderlinden , Wout Frederickx , Tine Brouns , Björn H Menze , Steven De Feyter , Jan Lipfert

Twisting DNA by salt.

Nucleic acids research

Avec: Sergio Cruz-León , Willem Vanderlinden , Peter Müller , Tobias Forster , Georgina Staudt , Yi-Yun Lin , Jan Lipfert , Nadine Schwierz

A conformational transition of the D'D3 domain primes von Willebrand factor for multimerization.

Blood advances

Avec: Sophia Gruber , Achim Löf , Adina Hausch , Fabian Kutzki , Res Jöhr , Tobias Obser , Gesa König , Reinhard Schneppenheim , Camilo Aponte-Santamaría , Frauke Gräter , Maria A Brehm , Martin Benoit , Jan Lipfert

DNA Origami Fiducial for Accurate 3D Atomic Force Microscopy Imaging.

Nano letters

Avec: Pauline J Kolbeck , Mihir Dass , Irina V Martynenko , Relinde J A van Dijk-Moes , Kelly J H Brouwer , Alfons van Blaaderen , Willem Vanderlinden , Tim Liedl , Jan Lipfert

Supercoiling-dependent DNA binding: quantitative modeling and applications to bulk and single-molecule experiments.

Nucleic acids research

Avec: Pauline J Kolbeck , Miloš Tišma , Brian T Analikwu , Willem Vanderlinden , Cees Dekker , Jan Lipfert

Exploring protein-mediated compaction of DNA by coarse-grained simulations and unsupervised learning.

Biophysical journal

Avec: Marjolein de Jager , Pauline J Kolbeck , Willem Vanderlinden , Jan Lipfert , Laura Filion

Accurate Drift-Invariant Single-Molecule Force Calibration Using the Hadamard Variance.

Biophysical journal

Avec: Stefanie D Pritzl , Alptuğ Ulugöl , Caroline Körösy , Laura Filion , Jan Lipfert

Designed anchoring geometries determine lifetimes of biotin-streptavidin bonds under constant load and enable ultra-stable coupling.

Nanoscale

Avec: Sophia Gruber , Achim Löf , Steffen M Sedlak , Martin Benoit , Hermann E Gaub , Jan Lipfert

Optical Investigation of Individual Red Blood Cells for Determining Cell Count and Cellular Hemoglobin Concentration in a Microfluidic Channel.

Micromachines

Avec: Ann-Kathrin Reichenwallner , Esma Vurmaz , Kristina Battis , Laura Handl , Helin Üstün , Tivadar Mach , Gabriele Hörnig , Jan Lipfert , Lukas Richter

Deciphering the Gene Regulatory Landscape Encoded in DNA Biophysical Features.

iScience

Avec: Abhijeet Pataskar , Willem Vanderlinden , Johannes Emmerig , Aditi Singh , Jan Lipfert , Vijay K Tiwari

Quantifying epigenetic modulation of nucleosome breathing by high-throughput AFM imaging.

Biophysical journal

Avec: Sebastian F Konrad , Willem Vanderlinden , Jan Lipfert

Thermally Switchable Nanogate Based on Polymer Phase Transition.

Nano letters

Avec: Pauline J Kolbeck , Dihia Benaoudia , Léa Chazot-Franguiadakis , Gwendoline Delecourt , Jérôme Mathé , Sha Li , Romeo Bonnet , Pascal Martin , Jan Lipfert , Anna Salvetti , Mordjane Boukhet , Véronique Bennevault , Jean-Christophe Lacroix , Philippe Guégan , Fabien Montel

High-yield ligation-free assembly of DNA constructs with nucleosome positioning sequence repeats for single-molecule manipulation assays.

The Journal of biological chemistry

Avec: Yi-Yun Lin , Tine Brouns , Pauline J Kolbeck , Willem Vanderlinden , Jan Lipfert

Temperature-Dependent Twist of Double-Stranded RNA Probed by Magnetic Tweezer Experiments and Molecular Dynamics Simulations.

The journal of physical chemistry. B

Avec: Hana Dohnalová , Mona Seifert , Eva Matoušková , Misha Klein , Flávia S Papini , Jan Lipfert , David Dulin , Filip Lankaš

Réseau de co-auteurs

Willem Vanderlinden 15 collaborations

Pauline J Kolbeck 11 collaborations

Sophia Gruber 5 collaborations

Thomas Nicolaus 4 collaborations

Sebastian F Konrad 4 collaborations

Adina Hausch 3 collaborations

Lukas F Milles 3 collaborations

Hermann E Gaub 3 collaborations

Yi-Yun Lin 3 collaborations

Philipp U Walker 3 collaborations

Achim Löf 3 collaborations

Steffen M Sedlak 3 collaborations

Martin Benoit 3 collaborations

Tine Brouns 3 collaborations

Aidin Lak 3 collaborations

Hana Dohnalová 2 collaborations

Filip Lankaš 2 collaborations

Magnus S Bauer 2 collaborations

Priscila S F C Gomes 2 collaborations

Marcelo C R Melo 2 collaborations

Rafael C Bernardi 2 collaborations

Peter Müller 2 collaborations

Wout Frederickx 2 collaborations

Tobias Obser 2 collaborations

Maria A Brehm 2 collaborations

Frank Ludwig 2 collaborations

Tim Liedl 2 collaborations

Laura Filion 2 collaborations

Tomáš Dršata 1 collaboration

Jiří Šponer 1 collaboration

Martin Zacharias 1 collaboration

Leonard C Schendel 1 collaboration

Pilar López Navajas 1 collaboration

Erik Procko 1 collaboration

Daniel Lietha 1 collaboration

Evdoxia Karagianni 1 collaboration

Nicola Hepp 1 collaboration

Felix Mueller-Planitz 1 collaboration

Franziska Kriegel 1 collaboration

Carola Lampe 1 collaboration

Alexander S Urban 1 collaboration

Cécile Moucheron 1 collaboration

Katharina Ott 1 collaboration

Linda Martini 1 collaboration

Ulrich Gerland 1 collaboration

Shan Zhao 1 collaboration

Mihail Ivilinov Todorov 1 collaboration

Ruiyao Cai 1 collaboration

Rami Ai -Maskari 1 collaboration

Hanno Steinke 1 collaboration

Elisabeth Kemter 1 collaboration

Hongcheng Mai 1 collaboration

Zhouyi Rong 1 collaboration

Martin Warmer 1 collaboration

Karen Stanic 1 collaboration

Oliver Schoppe 1 collaboration

Johannes Christian Paetzold 1 collaboration

Benno Gesierich 1 collaboration

Milagros N Wong 1 collaboration

Tobias B Huber 1 collaboration

Marco Duering 1 collaboration

Oliver Thomas Bruns 1 collaboration

Bjoern Menze 1 collaboration

Victor G Puelles 1 collaboration

Eckhard Wolf 1 collaboration

Ingo Bechmann 1 collaboration

Ali Ertürk 1 collaboration

Wolfgang Ott 1 collaboration

Philipp C Nickels 1 collaboration

Zeger Debyser 1 collaboration

Tamara Kahmann 1 collaboration

Simon Jakob Schaper 1 collaboration

Jaroslava Obel 1 collaboration

Peter Müller-Buschbaum 1 collaboration

Enrico Skoruppa 1 collaboration

Enrico Carlon 1 collaboration

Yihao Wang 1 collaboration

Christoph Pauer 1 collaboration

Mohammad Suman Chowdhury 1 collaboration

Marco Cassani 1 collaboration

Thilo Viereck 1 collaboration

Florian Selbach 1 collaboration

Philip Tinnefeld 1 collaboration

Meinhard Schilling 1 collaboration

Joe Tavacoli 1 collaboration

Thomas Zettl 1 collaboration

Xuesong Shi 1 collaboration

Steve Bonilla 1 collaboration

Daniel Herschlag 1 collaboration

Gerd Gemmecker 1 collaboration

Christian Gebhardt 1 collaboration

Martin Lehmann 1 collaboration

Thorben Cordes 1 collaboration

Björn H Menze 1 collaboration

Steven De Feyter 1 collaboration

Sergio Cruz-León 1 collaboration

Tobias Forster 1 collaboration

Georgina Staudt 1 collaboration

Nadine Schwierz 1 collaboration

Fabian Kutzki 1 collaboration

Res Jöhr 1 collaboration

Gesa König 1 collaboration

Reinhard Schneppenheim 1 collaboration

Camilo Aponte-Santamaría 1 collaboration

Frauke Gräter 1 collaboration

Mihir Dass 1 collaboration

Irina V Martynenko 1 collaboration

Relinde J A van Dijk-Moes 1 collaboration

Kelly J H Brouwer 1 collaboration

Alfons van Blaaderen 1 collaboration

Miloš Tišma 1 collaboration

Brian T Analikwu 1 collaboration

Cees Dekker 1 collaboration

Marjolein de Jager 1 collaboration

Stefanie D Pritzl 1 collaboration

Alptuğ Ulugöl 1 collaboration

Caroline Körösy 1 collaboration

Ann-Kathrin Reichenwallner 1 collaboration

Esma Vurmaz 1 collaboration

Kristina Battis 1 collaboration

Laura Handl 1 collaboration

Helin Üstün 1 collaboration

Tivadar Mach 1 collaboration

Gabriele Hörnig 1 collaboration

Lukas Richter 1 collaboration

Abhijeet Pataskar 1 collaboration

Johannes Emmerig 1 collaboration

Aditi Singh 1 collaboration

Vijay K Tiwari 1 collaboration

Dihia Benaoudia 1 collaboration

Léa Chazot-Franguiadakis 1 collaboration

Gwendoline Delecourt 1 collaboration

Jérôme Mathé 1 collaboration

Sha Li 1 collaboration

Romeo Bonnet 1 collaboration

Pascal Martin 1 collaboration

Anna Salvetti 1 collaboration

Mordjane Boukhet 1 collaboration

Véronique Bennevault 1 collaboration

Jean-Christophe Lacroix 1 collaboration

Philippe Guégan 1 collaboration

Fabien Montel 1 collaboration

Mona Seifert 1 collaboration

Eva Matoušková 1 collaboration

Misha Klein 1 collaboration

Flávia S Papini 1 collaboration

David Dulin 1 collaboration