Jennifer Colonell

Affiliations

HHMI Janelia Research Campus, Ashburn, VA, USA.

Publications (10)

Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes.

Nature communications

Avec: Kyu Hyun Lee , Yu-Li Ni , Jennifer Colonell , Bill Karsh , Jan Putzeys , Marius Pachitariu , Timothy D Harris , Markus Meister

An unbiased template of the Drosophila brain and ventral nerve cord.

PloS one

Avec: John A Bogovic , Hideo Otsuna , Larissa Heinrich , Masayoshi Ito , Jennifer Jeter , Geoffrey Meissner , Aljoscha Nern , Jennifer Colonell , Oz Malkesman , Kei Ito , Stephan Saalfeld

Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.

Science (New York, N.Y.)

Avec: Ruixuan Gao , Shoh M Asano , Srigokul Upadhyayula , Igor Pisarev , Daniel E Milkie , Tsung-Li Liu , Ved Singh , Austin Graves , Grace H Huynh , Yongxin Zhao , John Bogovic , Jennifer Colonell , Carolyn M Ott , Christopher Zugates , Susan Tappan , Alfredo Rodriguez , Kishore R Mosaliganti , Shu-Hsien Sheu , H Amalia Pasolli , Song Pang , C Shan Xu , Sean G Megason , Harald Hess , Jennifer Lippincott-Schwartz , Adam Hantman , Gerald M Rubin , Tom Kirchhausen , Stephan Saalfeld , Yoshinori Aso , Edward S Boyden , Eric Betzig

Large-scale high-density brain-wide neural recording in nonhuman primates.

bioRxiv : the preprint server for biology

Avec: Eric M Trautmann , Janis K Hesse , Gabriel M Stine , Ruobing Xia , Shude Zhu , Daniel J O'Shea , Bill Karsh , Jennifer Colonell , Frank F Lanfranchi , Saurabh Vyas , Andrew Zimnik , Natalie A Steinmann , Daniel A Wagenaar , Alexandru Andrei , Carolina Mora Lopez , John O'Callaghan , Jan Putzeys , Bogdan C Raducanu , Marleen Welkenhuysen , Mark Churchland , Tirin Moore , Michael Shadlen , Krishna Shenoy , Doris Tsao , Barundeb Dutta , Timothy Harris

Brain-wide neural activity underlying memory-guided movement.

Cell

Avec: Susu Chen , Yi Liu , Ziyue Aiden Wang , Jennifer Colonell , Liu D Liu , Han Hou , Nai-Wen Tien , Tim Wang , Timothy Harris , Shaul Druckmann , Nuo Li , Karel Svoboda

Multi-day neuron tracking in high-density electrophysiology recordings using earth mover's distance.

eLife

Avec: Augustine Xiaoran Yuan , Jennifer Colonell , Anna Lebedeva , Michael Okun , Adam S Charles , Timothy D Harris

Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings.

Science (New York, N.Y.)

Avec: Nicholas A Steinmetz , Cagatay Aydin , Anna Lebedeva , Michael Okun , Marius Pachitariu , Marius Bauza , Maxime Beau , Jai Bhagat , Claudia Böhm , Martijn Broux , Susu Chen , Jennifer Colonell , Richard J Gardner , Bill Karsh , Fabian Kloosterman , Dimitar Kostadinov , Carolina Mora-Lopez , John O'Callaghan , Junchol Park , Jan Putzeys , Britton Sauerbrei , Rik J J van Daal , Abraham Z Vollan , Shiwei Wang , Marleen Welkenhuysen , Zhiwen Ye , Joshua T Dudman , Barundeb Dutta , Adam W Hantman , Kenneth D Harris , Albert K Lee , Edvard I Moser , John O'Keefe , Alfonso Renart , Karel Svoboda , Michael Häusser , Sebastian Haesler , Matteo Carandini , Timothy D Harris

Multi-day Neuron Tracking in High Density Electrophysiology Recordings using EMD.

bioRxiv : the preprint server for biology

Avec: Augustine Xiaoran Yuan , Jennifer Colonell , Anna Lebedeva , Michael Okun , Adam S Charles , Timothy D Harris

Rapid reconstruction of neural circuits using tissue expansion and light sheet microscopy.

eLife

Avec: Joshua L Lillvis , Hideo Otsuna , Xiaoyu Ding , Igor Pisarev , Takashi Kawase , Jennifer Colonell , Konrad Rokicki , Cristian Goina , Ruixuan Gao , Amy Hu , Kaiyu Wang , John Bogovic , Daniel E Milkie , Linus Meienberg , Brett D Mensh , Edward S Boyden , Stephan Saalfeld , Paul W Tillberg , Barry J Dickson

Ultra-high density electrodes improve detection, yield, and cell type specificity of brain recordings.

bioRxiv : the preprint server for biology

Avec: Zhiwen Ye , Andrew M Shelton , Jordan R Shaker , Julien Boussard , Jennifer Colonell , Sahar Manavi , Susu Chen , Charlie Windolf , Cole Hurwitz , Tomoyuki Namima , Federico Pedraja , Shahaf Weiss , Bogdan Raducanu , Torbjørn V Ness , Gaute T Einevoll , Gilles Laurent , Nathaniel B Sawtell , Wyeth Bair , Anitha Pasupathy , Carolina Mora Lopez , Barun Dutta , Liam Paninski , Joshua H Siegle , Christof Koch , Shawn R Olsen , Timothy D Harris , Nicholas A Steinmetz

Réseau de co-auteurs

Timothy D Harris 5 collaborations

Bill Karsh 3 collaborations

Jan Putzeys 3 collaborations

Stephan Saalfeld 3 collaborations

Susu Chen 3 collaborations

Anna Lebedeva 3 collaborations

Michael Okun 3 collaborations

Marius Pachitariu 2 collaborations

Hideo Otsuna 2 collaborations

Ruixuan Gao 2 collaborations

Igor Pisarev 2 collaborations

Daniel E Milkie 2 collaborations

John Bogovic 2 collaborations

Edward S Boyden 2 collaborations

Carolina Mora Lopez 2 collaborations

John O'Callaghan 2 collaborations

Marleen Welkenhuysen 2 collaborations

Barundeb Dutta 2 collaborations

Timothy Harris 2 collaborations

Karel Svoboda 2 collaborations

Augustine Xiaoran Yuan 2 collaborations

Adam S Charles 2 collaborations

Nicholas A Steinmetz 2 collaborations

Zhiwen Ye 2 collaborations

Kyu Hyun Lee 1 collaboration

Yu-Li Ni 1 collaboration

Markus Meister 1 collaboration

John A Bogovic 1 collaboration

Larissa Heinrich 1 collaboration

Masayoshi Ito 1 collaboration

Jennifer Jeter 1 collaboration

Geoffrey Meissner 1 collaboration

Aljoscha Nern 1 collaboration

Oz Malkesman 1 collaboration

Kei Ito 1 collaboration

Shoh M Asano 1 collaboration

Srigokul Upadhyayula 1 collaboration

Tsung-Li Liu 1 collaboration

Ved Singh 1 collaboration

Austin Graves 1 collaboration

Grace H Huynh 1 collaboration

Yongxin Zhao 1 collaboration

Carolyn M Ott 1 collaboration

Christopher Zugates 1 collaboration

Susan Tappan 1 collaboration

Alfredo Rodriguez 1 collaboration

Kishore R Mosaliganti 1 collaboration

Shu-Hsien Sheu 1 collaboration

H Amalia Pasolli 1 collaboration

Song Pang 1 collaboration

C Shan Xu 1 collaboration

Sean G Megason 1 collaboration

Harald Hess 1 collaboration

Jennifer Lippincott-Schwartz 1 collaboration

Adam Hantman 1 collaboration

Gerald M Rubin 1 collaboration

Tom Kirchhausen 1 collaboration

Yoshinori Aso 1 collaboration

Eric Betzig 1 collaboration

Eric M Trautmann 1 collaboration

Janis K Hesse 1 collaboration

Gabriel M Stine 1 collaboration

Ruobing Xia 1 collaboration

Shude Zhu 1 collaboration

Daniel J O'Shea 1 collaboration

Frank F Lanfranchi 1 collaboration

Saurabh Vyas 1 collaboration

Andrew Zimnik 1 collaboration

Natalie A Steinmann 1 collaboration

Daniel A Wagenaar 1 collaboration

Alexandru Andrei 1 collaboration

Bogdan C Raducanu 1 collaboration

Mark Churchland 1 collaboration

Tirin Moore 1 collaboration

Michael Shadlen 1 collaboration

Krishna Shenoy 1 collaboration

Doris Tsao 1 collaboration

Yi Liu 1 collaboration

Ziyue Aiden Wang 1 collaboration

Liu D Liu 1 collaboration

Han Hou 1 collaboration

Nai-Wen Tien 1 collaboration

Tim Wang 1 collaboration

Shaul Druckmann 1 collaboration

Nuo Li 1 collaboration

Cagatay Aydin 1 collaboration

Marius Bauza 1 collaboration

Maxime Beau 1 collaboration

Jai Bhagat 1 collaboration

Claudia Böhm 1 collaboration

Martijn Broux 1 collaboration

Richard J Gardner 1 collaboration

Fabian Kloosterman 1 collaboration

Dimitar Kostadinov 1 collaboration

Carolina Mora-Lopez 1 collaboration

Junchol Park 1 collaboration

Britton Sauerbrei 1 collaboration

Rik J J van Daal 1 collaboration

Abraham Z Vollan 1 collaboration

Shiwei Wang 1 collaboration

Joshua T Dudman 1 collaboration

Adam W Hantman 1 collaboration

Kenneth D Harris 1 collaboration

Albert K Lee 1 collaboration

Edvard I Moser 1 collaboration

John O'Keefe 1 collaboration

Alfonso Renart 1 collaboration

Michael Häusser 1 collaboration

Sebastian Haesler 1 collaboration

Matteo Carandini 1 collaboration

Joshua L Lillvis 1 collaboration

Xiaoyu Ding 1 collaboration

Takashi Kawase 1 collaboration

Konrad Rokicki 1 collaboration

Cristian Goina 1 collaboration

Amy Hu 1 collaboration

Kaiyu Wang 1 collaboration

Linus Meienberg 1 collaboration

Brett D Mensh 1 collaboration

Paul W Tillberg 1 collaboration

Barry J Dickson 1 collaboration

Andrew M Shelton 1 collaboration

Jordan R Shaker 1 collaboration

Julien Boussard 1 collaboration

Sahar Manavi 1 collaboration

Charlie Windolf 1 collaboration

Cole Hurwitz 1 collaboration

Tomoyuki Namima 1 collaboration

Federico Pedraja 1 collaboration

Shahaf Weiss 1 collaboration

Bogdan Raducanu 1 collaboration

Torbjørn V Ness 1 collaboration

Gaute T Einevoll 1 collaboration

Gilles Laurent 1 collaboration

Nathaniel B Sawtell 1 collaboration

Wyeth Bair 1 collaboration

Anitha Pasupathy 1 collaboration

Barun Dutta 1 collaboration

Liam Paninski 1 collaboration

Joshua H Siegle 1 collaboration

Christof Koch 1 collaboration

Shawn R Olsen 1 collaboration