John Muschelli

Affiliations

Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States.

Publications (33)

Recommendations for Processing Head CT Data.

Frontiers in neuroinformatics

Avec: John Muschelli

ROC and AUC with a Binary Predictor: a Potentially Misleading Metric.

Journal of classification

Avec: John Muschelli

The National COVID Cohort Collaborative: Clinical Characterization and Early Severity Prediction.

medRxiv : the preprint server for health sciences

Avec: Tellen D Bennett , Richard A Moffitt , Janos G Hajagos , Benjamin Amor , Adit Anand , Mark M Bissell , Katie Rebecca Bradwell , Carolyn Bremer , James Brian Byrd , Alina Denham , Peter E DeWitt , Davera Gabriel , Brian T Garibaldi , Andrew T Girvin , Justin Guinney , Elaine L Hill , Stephanie S Hong , Hunter Jimenez , Ramakanth Kavuluru , Kristin Kostka , Harold P Lehmann , Eli Levitt , Sandeep K Mallipattu , Amin Manna , Julie A McMurry , Michele Morris , John Muschelli , Andrew J Neumann , Matvey B Palchuk , Emily R Pfaff , Zhenglong Qian , Nabeel Qureshi , Seth Russell , Heidi Spratt , Anita Walden , Andrew E Williams , Jacob T Wooldridge , Yun Jae Yoo , Xiaohan Tanner Zhang , Richard L Zhu , Christopher P Austin , Joel H Saltz , Ken R Gersing , Melissa A Haendel , Christopher G Chute , Auteur inconnu

Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative.

JAMA network open

ModelArray: An R package for statistical analysis of fixel-wise data.

NeuroImage

Avec: Chenying Zhao , Tinashe M Tapera , Joëlle Bagautdinova , Josiane Bourque , Sydney Covitz , Raquel E Gur , Ruben C Gur , Bart Larsen , Kahini Mehta , Steven L Meisler , Kristin Murtha , John Muschelli , David R Roalf , Valerie J Sydnor , Alessandra M Valcarcel , Russell T Shinohara , Matthew Cieslak , Theodore D Satterthwaite

NHANES 2011-2014: Objective Physical Activity is the Strongest Predictor of All-Cause Mortality.

Medicine and science in sports and exercise

Avec: Andrew Leroux , Erjia Cui , Ekaterina Smirnova , John Muschelli , Jennifer A Schrack , Ciprian M Crainiceanu

Curating and translating the evidence about SARS-CoV-2 and COVID-19 for frontline public health and clinical care: The Novel Coronavirus Research Compendium (NCRC).

medRxiv : the preprint server for health sciences

Avec: Andrew D Redd , Lauren Peetluk , Brooke Jarrett , Colleen Hanrahan , Sheree Schwartz , Amrita Rao , Andrew Jaffe , Carli Jones , Chelsea Lutz , Clif McKee , Eshan Patel , Greg Rosen , Henri Garrison Desany , Heather McKay , John Muschelli , Kayte Andersen , Malen A Link , Nikolas Wada , Prativa Baral , Ruth Young , Denali Boon , M Kate Grabowski , Emily S Gurley , Auteur inconnu

Template Creation for High-Resolution Computed Tomography Scans of the Lung in R Software.

Academic radiology

Avec: Sarah M Ryan , Brian Vestal , Lisa A Maier , Nichole E Carlson , John Muschelli

Interpreting blood GLUcose data with R package iglu.

PloS one

Avec: Steven Broll , Jacek Urbanek , David Buchanan , Elizabeth Chun , John Muschelli , Naresh M Punjabi , Irina Gaynanova

A multi-scanner neuroimaging data harmonization using RAVEL and ComBat.

NeuroImage

Avec: Mahbaneh Eshaghzadeh Torbati , Davneet S Minhas , Ghasan Ahmad , Erin E O'Connor , John Muschelli , Charles M Laymon , Zixi Yang , Ann D Cohen , Howard J Aizenstein , William E Klunk , Bradley T Christian , Seong Jae Hwang , Ciprian M Crainiceanu , Dana L Tudorascu

Bayesian deep learning outperforms clinical trial estimators of intracerebral and intraventricular hemorrhage volume.

Journal of neuroimaging : official journal of the American Society of Neuroimaging

Avec: Matthew F Sharrock , W Andrew Mould , Meghan Hildreth , E Paul Ryu , Nathan Walborn , Issam A Awad , Daniel F Hanley , John Muschelli

Open-source Tools for Training Resources - OTTR.

Journal of statistics and data science education : an official journal of the of the American Statistical Association

Avec: Candace Savonen , Carrie Wright , Ava M Hoffman , John Muschelli , Katherine Cox , Frederick J Tan , Jeffrey T Leek

Diurnal Physical Activity Patterns across Ages in a Large UK Based Cohort: The UK Biobank Study.

Sensors (Basel, Switzerland)

Avec: Julia Wrobel , John Muschelli , Andrew Leroux

Sex and gender differences in COVID testing, hospital admission, presentation, and drivers of severe outcomes in the DC/Maryland region.

medRxiv : the preprint server for health sciences

Avec: Eileen P Scully , Grant Schumock , Martina Fu , Guido Massaccesi , John Muschelli , Joshua Betz , Eili Y Klein , Natalie E West , Matthew Robinson , Brian T Garibaldi , Karen Bandeen-Roche , Scott Zeger , Sabra L Klein , Amita Gupta , Auteur inconnu

Outcome-Stratified Analysis of Biomarker Trajectories for Patients Infected With Severe Acute Respiratory Syndrome Coronavirus 2.

American journal of epidemiology

Avec: Mary G Bowring , Zitong Wang , Yizhen Xu , Joshua Betz , John Muschelli , Brian T Garibaldi , Scott L Zeger

Development of Severe COVID-19 Adaptive Risk Predictor (SCARP), a Calculator to Predict Severe Disease or Death in Hospitalized Patients With COVID-19.

Annals of internal medicine

Avec: Shannon Wongvibulsin , Brian T Garibaldi , Annukka A R Antar , Jiyang Wen , Mei-Cheng Wang , Amita Gupta , Robert Bollinger , Yanxun Xu , Kunbo Wang , Joshua F Betz , John Muschelli , Karen Bandeen-Roche , Scott L Zeger , Matthew L Robinson

Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.

Genetic epidemiology

Avec: Guanghao Qi , Diptavo Dutta , Andrew Leroux , Debashree Ray , John Muschelli , Ciprian Crainiceanu , Nilanjan Chatterjee

Comparison of Accelerometry-Based Measures of Physical Activity: Retrospective Observational Data Analysis Study.

JMIR mHealth and uHealth

Avec: Marta Karas , John Muschelli , Andrew Leroux , Jacek K Urbanek , Amal A Wanigatunga , Jiawei Bai , Ciprian M Crainiceanu , Jennifer A Schrack

TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation in Multiple Sclerosis.

NeuroImage. Clinical

Avec: Alessandra M Valcarcel , John Muschelli , Dzung L Pham , Melissa Lynne Martin , Paul Yushkevich , Rachel Brandstadter , Kristina R Patterson , Matthew K Schindler , Peter A Calabresi , Rohit Bakshi , Russell T Shinohara

Relationship of White Matter Lesions with Intracerebral Hemorrhage Expansion and Functional Outcome: MISTIE II and CLEAR III.

Neurocritical care

Avec: Björn M Hansen , Natalie Ullman , John Muschelli , Bo Norrving , Rachel Dlugash , Radhika Avadhani , Issam Awad , Mario Zuccarello , Wendy C Ziai , Daniel F Hanley , Richard E Thompson , Arne Lindgren , Auteur inconnu

Rxnat: An Open-Source R Package for XNAT-Based Repositories.

Frontiers in neuroinformatics

Avec: Adrian Gherman , John Muschelli , Brian Caffo , Ciprian Crainiceanu

3D Deep Neural Network Segmentation of Intracerebral Hemorrhage: Development and Validation for Clinical Trials.

Neuroinformatics

Avec: Matthew F Sharrock , W Andrew Mould , Hasan Ali , Meghan Hildreth , Issam A Awad , Daniel F Hanley , John Muschelli

Sex and Gender Differences in Testing, Hospital Admission, Clinical Presentation, and Drivers of Severe Outcomes From COVID-19.

Open forum infectious diseases

Predictive performance of selected breath volatile organic carbon compounds in stage 1 lung cancer.

Translational lung cancer research

Avec: Ekaterina Smirnova , Christopher Mallow , John Muschelli , Yuan Shao , Jeffrey Thiboutot , Andres Lam , Ana M Rule , Ciprian Crainiceanu , Lonny Yarmus

Occurrence of Low Cardiac Index During Normotensive Periods in Cardiac Surgery: A Prospective Cohort Study Using Continuous Noninvasive Cardiac Output Monitoring.

Anesthesia and analgesia

Avec: Lee A Goeddel , Lily Koffman , Marina Hernandez , Glenn Whitman , Chirag R Parikh , Joao A C Lima , Karen Bandeen-Roche , Xinkai Zhou , John Muschelli , Ciprian Crainiceanu , Nauder Faraday , Charles Brown

Postcardiac arrest neurological prognostication with quantitative regional cerebral densitometry.

Resuscitation

Avec: Yousef Hannawi , John Muschelli , Maximilian Mulder , Matthew Sharrock , Christian Storm , Christoph Leithner , Ciprian M Crainiceanu , Robert D Stevens

An improved algorithm of white matter hyperintensity detection in elderly adults.

NeuroImage. Clinical

Avec: T Ding , A D Cohen , E E O'Connor , H T Karim , A Crainiceanu , J Muschelli , O Lopez , W E Klunk , H J Aizenstein , R Krafty , C M Crainiceanu , D L Tudorascu

Neuroconductor: an R platform for medical imaging analysis.

Biostatistics (Oxford, England)

Avec: John Muschelli , Adrian Gherman , Jean-Philippe Fortin , Brian Avants , Brandon Whitcher , Jonathan D Clayden , Brian S Caffo , Ciprian M Crainiceanu

ciftiTools: A package for reading, writing, visualizing, and manipulating CIFTI files in R.

NeuroImage

Avec: Damon D Pham , John Muschelli , Amanda F Mejia

Moderated t-tests for group-level fMRI analysis.

NeuroImage

Avec: Guoqing Wang , John Muschelli , Martin A Lindquist

The ANTsX ecosystem for quantitative biological and medical imaging.

Scientific reports

Avec: Nicholas J Tustison , Philip A Cook , Andrew J Holbrook , Hans J Johnson , John Muschelli , Gabriel A Devenyi , Jeffrey T Duda , Sandhitsu R Das , Nicholas C Cullen , Daniel L Gillen , Michael A Yassa , James R Stone , James C Gee , Brian B Avants

Quantifying the Predictive Performance of Objectively Measured Physical Activity on Mortality in the UK Biobank.

The journals of gerontology. Series A, Biological sciences and medical sciences

Avec: Andrew Leroux , Shiyao Xu , Prosenjit Kundu , John Muschelli , Ekaterina Smirnova , Nilanjan Chatterjee , Ciprian Crainiceanu

Patient Trajectories Among Persons Hospitalized for COVID-19 : A Cohort Study.

Annals of internal medicine

Avec: Brian T Garibaldi , Jacob Fiksel , John Muschelli , Matthew L Robinson , Masoud Rouhizadeh , Jamie Perin , Grant Schumock , Paul Nagy , Josh H Gray , Harsha Malapati , Mariam Ghobadi-Krueger , Timothy M Niessen , Bo Soo Kim , Peter M Hill , M Shafeeq Ahmed , Eric D Dobkin , Renee Blanding , Jennifer Abele , Bonnie Woods , Kenneth Harkness , David R Thiemann , Mary G Bowring , Aalok B Shah , Mei-Cheng Wang , Karen Bandeen-Roche , Antony Rosen , Scott L Zeger , Amita Gupta

Réseau de co-auteurs

Brian T Garibaldi 7 collaborations

None None 5 collaborations

Andrew Leroux 5 collaborations

Ciprian M Crainiceanu 5 collaborations

Karen Bandeen-Roche 5 collaborations

Ciprian Crainiceanu 5 collaborations

Amita Gupta 4 collaborations

Ekaterina Smirnova 3 collaborations

Daniel F Hanley 3 collaborations

Grant Schumock 3 collaborations

Joshua Betz 3 collaborations

Scott L Zeger 3 collaborations

Tellen D Bennett 2 collaborations

Richard A Moffitt 2 collaborations

Janos G Hajagos 2 collaborations

Benjamin Amor 2 collaborations

Adit Anand 2 collaborations

Mark M Bissell 2 collaborations

Katie Rebecca Bradwell 2 collaborations

Carolyn Bremer 2 collaborations

James Brian Byrd 2 collaborations

Alina Denham 2 collaborations

Peter E DeWitt 2 collaborations

Davera Gabriel 2 collaborations

Andrew T Girvin 2 collaborations

Justin Guinney 2 collaborations

Elaine L Hill 2 collaborations

Stephanie S Hong 2 collaborations

Hunter Jimenez 2 collaborations

Ramakanth Kavuluru 2 collaborations

Kristin Kostka 2 collaborations

Harold P Lehmann 2 collaborations

Eli Levitt 2 collaborations

Sandeep K Mallipattu 2 collaborations

Amin Manna 2 collaborations

Julie A McMurry 2 collaborations

Michele Morris 2 collaborations

Andrew J Neumann 2 collaborations

Matvey B Palchuk 2 collaborations

Emily R Pfaff 2 collaborations

Zhenglong Qian 2 collaborations

Nabeel Qureshi 2 collaborations

Seth Russell 2 collaborations

Heidi Spratt 2 collaborations

Anita Walden 2 collaborations

Andrew E Williams 2 collaborations

Jacob T Wooldridge 2 collaborations

Yun Jae Yoo 2 collaborations

Xiaohan Tanner Zhang 2 collaborations

Richard L Zhu 2 collaborations

Christopher P Austin 2 collaborations

Joel H Saltz 2 collaborations

Ken R Gersing 2 collaborations

Melissa A Haendel 2 collaborations

Christopher G Chute 2 collaborations

Alessandra M Valcarcel 2 collaborations

Russell T Shinohara 2 collaborations

Jennifer A Schrack 2 collaborations

Matthew F Sharrock 2 collaborations

W Andrew Mould 2 collaborations

Meghan Hildreth 2 collaborations

Issam A Awad 2 collaborations

Eileen P Scully 2 collaborations

Martina Fu 2 collaborations

Guido Massaccesi 2 collaborations

Eili Y Klein 2 collaborations

Natalie E West 2 collaborations

Matthew Robinson 2 collaborations

Scott Zeger 2 collaborations

Sabra L Klein 2 collaborations

Mary G Bowring 2 collaborations

Mei-Cheng Wang 2 collaborations

Matthew L Robinson 2 collaborations

Nilanjan Chatterjee 2 collaborations

Adrian Gherman 2 collaborations

Chenying Zhao 1 collaboration

Tinashe M Tapera 1 collaboration

Joëlle Bagautdinova 1 collaboration

Josiane Bourque 1 collaboration

Sydney Covitz 1 collaboration

Raquel E Gur 1 collaboration

Ruben C Gur 1 collaboration

Bart Larsen 1 collaboration

Kahini Mehta 1 collaboration

Steven L Meisler 1 collaboration

Kristin Murtha 1 collaboration

David R Roalf 1 collaboration

Valerie J Sydnor 1 collaboration

Matthew Cieslak 1 collaboration

Theodore D Satterthwaite 1 collaboration

Erjia Cui 1 collaboration

Andrew D Redd 1 collaboration

Lauren Peetluk 1 collaboration

Brooke Jarrett 1 collaboration

Colleen Hanrahan 1 collaboration

Sheree Schwartz 1 collaboration

Amrita Rao 1 collaboration

Andrew Jaffe 1 collaboration

Carli Jones 1 collaboration

Chelsea Lutz 1 collaboration

Clif McKee 1 collaboration

Eshan Patel 1 collaboration

Greg Rosen 1 collaboration

Henri Garrison Desany 1 collaboration

Heather McKay 1 collaboration

Kayte Andersen 1 collaboration

Malen A Link 1 collaboration

Nikolas Wada 1 collaboration

Prativa Baral 1 collaboration

Ruth Young 1 collaboration

Denali Boon 1 collaboration

M Kate Grabowski 1 collaboration

Emily S Gurley 1 collaboration

Sarah M Ryan 1 collaboration

Brian Vestal 1 collaboration

Lisa A Maier 1 collaboration

Nichole E Carlson 1 collaboration

Steven Broll 1 collaboration

Jacek Urbanek 1 collaboration

David Buchanan 1 collaboration

Elizabeth Chun 1 collaboration

Naresh M Punjabi 1 collaboration

Irina Gaynanova 1 collaboration

Mahbaneh Eshaghzadeh Torbati 1 collaboration

Davneet S Minhas 1 collaboration

Ghasan Ahmad 1 collaboration

Erin E O'Connor 1 collaboration

Charles M Laymon 1 collaboration

Zixi Yang 1 collaboration

Ann D Cohen 1 collaboration

Howard J Aizenstein 1 collaboration

William E Klunk 1 collaboration

Bradley T Christian 1 collaboration

Seong Jae Hwang 1 collaboration

Dana L Tudorascu 1 collaboration

E Paul Ryu 1 collaboration

Nathan Walborn 1 collaboration

Candace Savonen 1 collaboration

Carrie Wright 1 collaboration

Ava M Hoffman 1 collaboration

Katherine Cox 1 collaboration

Frederick J Tan 1 collaboration

Jeffrey T Leek 1 collaboration

Julia Wrobel 1 collaboration

Zitong Wang 1 collaboration

Yizhen Xu 1 collaboration

Shannon Wongvibulsin 1 collaboration

Annukka A R Antar 1 collaboration

Jiyang Wen 1 collaboration

Robert Bollinger 1 collaboration

Yanxun Xu 1 collaboration

Kunbo Wang 1 collaboration

Joshua F Betz 1 collaboration

Guanghao Qi 1 collaboration

Diptavo Dutta 1 collaboration

Debashree Ray 1 collaboration

Marta Karas 1 collaboration

Jacek K Urbanek 1 collaboration

Amal A Wanigatunga 1 collaboration

Jiawei Bai 1 collaboration

Dzung L Pham 1 collaboration

Melissa Lynne Martin 1 collaboration

Paul Yushkevich 1 collaboration

Rachel Brandstadter 1 collaboration

Kristina R Patterson 1 collaboration

Matthew K Schindler 1 collaboration

Peter A Calabresi 1 collaboration

Rohit Bakshi 1 collaboration

Björn M Hansen 1 collaboration

Natalie Ullman 1 collaboration

Bo Norrving 1 collaboration

Rachel Dlugash 1 collaboration

Radhika Avadhani 1 collaboration

Issam Awad 1 collaboration

Mario Zuccarello 1 collaboration

Wendy C Ziai 1 collaboration

Richard E Thompson 1 collaboration

Arne Lindgren 1 collaboration

Brian Caffo 1 collaboration

Hasan Ali 1 collaboration

Christopher Mallow 1 collaboration

Yuan Shao 1 collaboration

Jeffrey Thiboutot 1 collaboration

Andres Lam 1 collaboration

Ana M Rule 1 collaboration

Lonny Yarmus 1 collaboration

Lee A Goeddel 1 collaboration

Lily Koffman 1 collaboration

Marina Hernandez 1 collaboration

Glenn Whitman 1 collaboration

Chirag R Parikh 1 collaboration

Joao A C Lima 1 collaboration

Xinkai Zhou 1 collaboration

Nauder Faraday 1 collaboration

Charles Brown 1 collaboration

Yousef Hannawi 1 collaboration

Maximilian Mulder 1 collaboration

Matthew Sharrock 1 collaboration

Christian Storm 1 collaboration

Christoph Leithner 1 collaboration

Robert D Stevens 1 collaboration

T Ding 1 collaboration

A D Cohen 1 collaboration

E E O'Connor 1 collaboration

H T Karim 1 collaboration

A Crainiceanu 1 collaboration

J Muschelli 1 collaboration

O Lopez 1 collaboration

W E Klunk 1 collaboration

H J Aizenstein 1 collaboration

R Krafty 1 collaboration

C M Crainiceanu 1 collaboration

D L Tudorascu 1 collaboration

Jean-Philippe Fortin 1 collaboration

Brian Avants 1 collaboration

Brandon Whitcher 1 collaboration

Jonathan D Clayden 1 collaboration

Brian S Caffo 1 collaboration

Damon D Pham 1 collaboration

Amanda F Mejia 1 collaboration

Guoqing Wang 1 collaboration

Martin A Lindquist 1 collaboration

Nicholas J Tustison 1 collaboration

Philip A Cook 1 collaboration

Andrew J Holbrook 1 collaboration

Hans J Johnson 1 collaboration

Gabriel A Devenyi 1 collaboration

Jeffrey T Duda 1 collaboration

Sandhitsu R Das 1 collaboration

Nicholas C Cullen 1 collaboration

Daniel L Gillen 1 collaboration

Michael A Yassa 1 collaboration

James R Stone 1 collaboration

James C Gee 1 collaboration

Brian B Avants 1 collaboration

Shiyao Xu 1 collaboration

Prosenjit Kundu 1 collaboration

Jacob Fiksel 1 collaboration

Masoud Rouhizadeh 1 collaboration

Jamie Perin 1 collaboration

Paul Nagy 1 collaboration

Josh H Gray 1 collaboration

Harsha Malapati 1 collaboration

Mariam Ghobadi-Krueger 1 collaboration

Timothy M Niessen 1 collaboration

Bo Soo Kim 1 collaboration

Peter M Hill 1 collaboration

M Shafeeq Ahmed 1 collaboration

Eric D Dobkin 1 collaboration

Renee Blanding 1 collaboration

Jennifer Abele 1 collaboration

Bonnie Woods 1 collaboration

Kenneth Harkness 1 collaboration

David R Thiemann 1 collaboration

Aalok B Shah 1 collaboration

Antony Rosen 1 collaboration