Neil Boonham

Affiliations

4 Institute for Agrifood Research Innovations, Newcastle University, Newcastle upon Tyne, U.K.

Publications (20)

Biological and Molecular Properties of

Plant disease

Avec: Cesar E Fribourg , Adrian J Gibbs , Ian P Adams , Neil Boonham , Roger A C Jones

Correction: Haegeman et al. Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests.

Plants (Basel, Switzerland)

Avec: Annelies Haegeman , Yoika Foucart , Kris De Jonghe , Thomas Goedefroit , Maher Al Rwahnih , Neil Boonham , Thierry Candresse , Yahya Z A Gaafar , Oscar P Hurtado-Gonzales , Zala Kogej Zwitter , Denis Kutnjak , Janja Lamovšek , Marie Lefebvre , Martha Malapi , Irena Mavrič Pleško , Serkan Önder , Jean-Sébastien Reynard , Ferran Salavert Pamblanco , Olivier Schumpp , Kristian Stevens , Chandan Pal , Lucie Tamisier , Çiğdem Ulubaş Serçe , Inge van Duivenbode , David W Waite , Xiaojun Hu , Heiko Ziebell , Sébastien Massart

Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent.

PloS one

Avec: Alisa Prusokiene , Neil Boonham , Adrian Fox , Thomas P Howard

Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests.

Plants (Basel, Switzerland)

A pond-side test for Guinea worm: Development of a loop-mediated isothermal amplification (LAMP) assay for detection of Dracunculus medinensis.

Experimental parasitology

Avec: Neil Boonham , Jenny Tomlinson , Sioban Ostoja-Starzewska , Robbie A McDonald

A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses.

Microorganisms

Avec: Denis Kutnjak , Lucie Tamisier , Ian Adams , Neil Boonham , Thierry Candresse , Michela Chiumenti , Kris De Jonghe , Jan F Kreuze , Marie Lefebvre , Gonçalo Silva , Martha Malapi-Wight , Paolo Margaria , Irena Mavrič Pleško , Sam McGreig , Laura Miozzi , Benoit Remenant , Jean-Sebastien Reynard , Johan Rollin , Mike Rott , Olivier Schumpp , Sébastien Massart , Annelies Haegeman

Potato Virus A Isolates from Three Continents: Their Biological Properties, Phylogenetics, and Prehistory.

Phytopathology

Avec: Segundo Fuentes , Adrian J Gibbs , Ian P Adams , Calum Wilson , Marleen Botermans , Adrian Fox , Jan Kreuze , Neil Boonham , Monica A Kehoe , Roger A C Jones

Systematic Comparison of Nanopore and Illumina Sequencing for the Detection of Plant Viruses and Viroids Using Total RNA Sequencing Approach.

Frontiers in microbiology

Avec: Anja Pecman , Ian Adams , Ion Gutiérrez-Aguirre , Adrian Fox , Neil Boonham , Maja Ravnikar , Denis Kutnjak

Complete Coding Sequence of

Microbiology resource announcements

Avec: Ian P Adams , Cesar Fribourg , Adrian Fox , Neil Boonham , Roger A C Jones

Genomic sequence and host range studies reveal considerable variation within the species Arracacha virus B.

Archives of virology

Avec: Roger A C Jones , Adrian Fox , Neil Boonham , Ian P Adams

Development of simplex and multiplex RT-qPCR assays for the detection of three cryptic viruses of black-grass (Alopecurus myosuroides).

Journal of virological methods

Avec: Jone Santín Azcona , Adrian Fox , Neil Boonham

A novel high-throughput sequencing approach reveals the presence of a new virus infecting Rosa: rosa ilarvirus-1 (RIV-1).

Journal of virological methods

Avec: Ines Vazquez-Iglesias , Sam McGreig , Hollie Pufal , Rebekah Robinson , Gerard R G Clover , Adrian Fox , Neil Boonham , Ian P Adams

The Phylogeography of Potato Virus X Shows the Fingerprints of Its Human Vector.

Viruses

Avec: Segundo Fuentes , Adrian J Gibbs , Mohammad Hajizadeh , Ana Perez , Ian P Adams , Cesar E Fribourg , Jan Kreuze , Adrian Fox , Neil Boonham , Roger A C Jones

Development and Validation of Methodology for Estimating Potato Canopy Structure for Field Crop Phenotyping and Improved Breeding.

Frontiers in plant science

Avec: Filipe de Jesus Colwell , Jock Souter , Glenn J Bryan , Lindsey J Compton , Neil Boonham , Ankush Prashar

Plant pest surveillance: from satellites to molecules.

Emerging topics in life sciences

Avec: Gonçalo Silva , Jenny Tomlinson , Nawaporn Onkokesung , Sarah Sommer , Latifa Mrisho , James Legg , Ian P Adams , Yaiza Gutierrez-Vazquez , Thomas P Howard , Alex Laverick , Oindrila Hossain , Qingshan Wei , Kaitlin M Gold , Neil Boonham

Genomics informed design of a suite of real-time PCR assays for the specific detection of each Xylella fastidiosa subspecies.

Journal of applied microbiology

Avec: J Hodgetts , R Glover , J Cole , J Hall , N Boonham

Monitoring and Surveillance of Aerial Mycobiota of Rice Paddy through DNA Metabarcoding and qPCR.

Journal of fungi (Basel, Switzerland)

Avec: Sara Franco Ortega , Ilario Ferrocino , Ian Adams , Simone Silvestri , Davide Spadaro , Maria Lodovica Gullino , Neil Boonham

Enhanced Apiaceous Potyvirus Phylogeny, Novel Viruses, and New Country and Host Records from Sequencing

Plants (Basel, Switzerland)

Avec: Adrian Fox , Adrian J Gibbs , Aimee R Fowkes , Hollie Pufal , Sam McGreig , Roger A C Jones , Neil Boonham , Ian P Adams

Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis.

Frontiers in microbiology

Avec: Nuria Fontdevila Pareta , Maryam Khalili , Ayoub Maachi , Mark Paul S Rivarez , Johan Rollin , Ferran Salavert , Coline Temple , Miguel A Aranda , Neil Boonham , Marleen Botermans , Thierry Candresse , Adrian Fox , Yolanda Hernando , Denis Kutnjak , Armelle Marais , Françoise Petter , Maja Ravnikar , Ilhem Selmi , Rachid Tahzima , Charlotte Trontin , Thierry Wetzel , Sebastien Massart

Appropriate sampling to aid on-farm assessments of the haplotype composition of Zymoseptoria tritici populations.

Pest management science

Avec: Catherine Harrison , Neil Boonham , Roy Macarthur , Michael David Parr , Femke van den Berg

Réseau de co-auteurs

Adrian Fox 10 collaborations

Ian P Adams 8 collaborations

Roger A C Jones 6 collaborations

Denis Kutnjak 5 collaborations

Adrian J Gibbs 4 collaborations

Thierry Candresse 4 collaborations

Annelies Haegeman 3 collaborations

Kris De Jonghe 3 collaborations

Marie Lefebvre 3 collaborations

Irena Mavrič Pleško 3 collaborations

Olivier Schumpp 3 collaborations

Lucie Tamisier 3 collaborations

Sébastien Massart 3 collaborations

Ian Adams 3 collaborations

Sam McGreig 3 collaborations

Cesar E Fribourg 2 collaborations

Yoika Foucart 2 collaborations

Thomas Goedefroit 2 collaborations

Maher Al Rwahnih 2 collaborations

Yahya Z A Gaafar 2 collaborations

Oscar P Hurtado-Gonzales 2 collaborations

Zala Kogej Zwitter 2 collaborations

Janja Lamovšek 2 collaborations

Martha Malapi 2 collaborations

Serkan Önder 2 collaborations

Jean-Sébastien Reynard 2 collaborations

Ferran Salavert Pamblanco 2 collaborations

Kristian Stevens 2 collaborations

Chandan Pal 2 collaborations

Çiğdem Ulubaş Serçe 2 collaborations

Inge van Duivenbode 2 collaborations

David W Waite 2 collaborations

Xiaojun Hu 2 collaborations

Heiko Ziebell 2 collaborations

Thomas P Howard 2 collaborations

Jenny Tomlinson 2 collaborations

Gonçalo Silva 2 collaborations

Johan Rollin 2 collaborations

Segundo Fuentes 2 collaborations

Marleen Botermans 2 collaborations

Jan Kreuze 2 collaborations

Maja Ravnikar 2 collaborations

Hollie Pufal 2 collaborations

Alisa Prusokiene 1 collaboration

Sioban Ostoja-Starzewska 1 collaboration

Robbie A McDonald 1 collaboration

Michela Chiumenti 1 collaboration

Jan F Kreuze 1 collaboration

Martha Malapi-Wight 1 collaboration

Paolo Margaria 1 collaboration

Laura Miozzi 1 collaboration

Benoit Remenant 1 collaboration

Jean-Sebastien Reynard 1 collaboration

Mike Rott 1 collaboration

Calum Wilson 1 collaboration

Monica A Kehoe 1 collaboration

Anja Pecman 1 collaboration

Ion Gutiérrez-Aguirre 1 collaboration

Cesar Fribourg 1 collaboration

Jone Santín Azcona 1 collaboration

Ines Vazquez-Iglesias 1 collaboration

Rebekah Robinson 1 collaboration

Gerard R G Clover 1 collaboration

Mohammad Hajizadeh 1 collaboration

Ana Perez 1 collaboration

Filipe de Jesus Colwell 1 collaboration

Jock Souter 1 collaboration

Glenn J Bryan 1 collaboration

Lindsey J Compton 1 collaboration

Ankush Prashar 1 collaboration

Nawaporn Onkokesung 1 collaboration

Sarah Sommer 1 collaboration

Latifa Mrisho 1 collaboration

James Legg 1 collaboration

Yaiza Gutierrez-Vazquez 1 collaboration

Alex Laverick 1 collaboration

Oindrila Hossain 1 collaboration

Qingshan Wei 1 collaboration

Kaitlin M Gold 1 collaboration

J Hodgetts 1 collaboration

R Glover 1 collaboration

J Cole 1 collaboration

J Hall 1 collaboration

N Boonham 1 collaboration

Sara Franco Ortega 1 collaboration

Ilario Ferrocino 1 collaboration

Simone Silvestri 1 collaboration

Davide Spadaro 1 collaboration

Maria Lodovica Gullino 1 collaboration

Aimee R Fowkes 1 collaboration

Nuria Fontdevila Pareta 1 collaboration

Maryam Khalili 1 collaboration

Ayoub Maachi 1 collaboration

Mark Paul S Rivarez 1 collaboration

Ferran Salavert 1 collaboration

Coline Temple 1 collaboration

Miguel A Aranda 1 collaboration

Yolanda Hernando 1 collaboration

Armelle Marais 1 collaboration

Françoise Petter 1 collaboration

Ilhem Selmi 1 collaboration

Rachid Tahzima 1 collaboration

Charlotte Trontin 1 collaboration

Thierry Wetzel 1 collaboration

Sebastien Massart 1 collaboration

Catherine Harrison 1 collaboration

Roy Macarthur 1 collaboration

Michael David Parr 1 collaboration

Femke van den Berg 1 collaboration