Simon Merkt

Affiliations

Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany.

Publications (7)

Seroepidemiology and model-based prediction of SARS-CoV-2 in Ethiopia: longitudinal cohort study among front-line hospital workers and communities.

The Lancet. Global health

Avec: Esayas Kebede Gudina , Solomon Ali , Eyob Girma , Addisu Gize , Birhanemeskel Tegene , Gadissa Bedada Hundie , Wondewosen Tsegaye Sime , Rozina Ambachew , Alganesh Gebreyohanns , Mahteme Bekele , Abhishek Bakuli , Kira Elsbernd , Simon Merkt , Lorenzo Contento , Michael Hoelscher , Jan Hasenauer , Andreas Wieser , Arne Kroidl

Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity.

Nature communications

Avec: Simon Merkt , Solomon Ali , Esayas Kebede Gudina , Wondimagegn Adissu , Addisu Gize , Maximilian Muenchhoff , Alexander Graf , Stefan Krebs , Kira Elsbernd , Rebecca Kisch , Sisay Sirgu Betizazu , Bereket Fantahun , Delayehu Bekele , Raquel Rubio-Acero , Mulatu Gashaw , Eyob Girma , Daniel Yilma , Ahmed Zeynudin , Ivana Paunovic , Michael Hoelscher , Helmut Blum , Jan Hasenauer , Arne Kroidl , Andreas Wieser

Tailoring COVID-19 Vaccination Strategies in High-Seroprevalence Settings: Insights from Ethiopia.

Vaccines

Avec: Esayas Kebede Gudina , Kira Elsbernd , Daniel Yilma , Rebecca Kisch , Karina Wallrafen-Sam , Gemeda Abebe , Zeleke Mekonnen , Melkamu Berhane , Mulusew Gerbaba , Sultan Suleman , Yoseph Mamo , Raquel Rubio-Acero , Solomon Ali , Ahmed Zeynudin , Simon Merkt , Jan Hasenauer , Temesgen Kabeta Chala , Andreas Wieser , Arne Kroidl

Mini-batch optimization enables training of ODE models on large-scale datasets.

Nature communications

Avec: Paul Stapor , Leonard Schmiester , Christoph Wierling , Simon Merkt , Dilan Pathirana , Bodo M H Lange , Daniel Weindl , Jan Hasenauer

PEtab-Interoperable specification of parameter estimation problems in systems biology.

PLoS computational biology

Avec: Leonard Schmiester , Yannik Schälte , Frank T Bergmann , Tacio Camba , Erika Dudkin , Janine Egert , Fabian Fröhlich , Lara Fuhrmann , Adrian L Hauber , Svenja Kemmer , Polina Lakrisenko , Carolin Loos , Simon Merkt , Wolfgang Müller , Dilan Pathirana , Elba Raimúndez , Lukas Refisch , Marcus Rosenblatt , Paul L Stapor , Philipp Städter , Dantong Wang , Franz-Georg Wieland , Julio R Banga , Jens Timmer , Alejandro F Villaverde , Sven Sahle , Clemens Kreutz , Jan Hasenauer , Daniel Weindl

pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.

Bioinformatics (Oxford, England)

Avec: Yannik Schälte , Fabian Fröhlich , Paul J Jost , Jakob Vanhoefer , Dilan Pathirana , Paul Stapor , Polina Lakrisenko , Dantong Wang , Elba Raimúndez , Simon Merkt , Leonard Schmiester , Philipp Städter , Stephan Grein , Erika Dudkin , Domagoj Doresic , Daniel Weindl , Jan Hasenauer

COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling.

Epidemics

Avec: Elba Raimúndez , Erika Dudkin , Jakob Vanhoefer , Emad Alamoudi , Simon Merkt , Lara Fuhrmann , Fan Bai , Jan Hasenauer

Réseau de co-auteurs

Jan Hasenauer 7 collaborations

Esayas Kebede Gudina 3 collaborations

Solomon Ali 3 collaborations

Kira Elsbernd 3 collaborations

Andreas Wieser 3 collaborations

Arne Kroidl 3 collaborations

Leonard Schmiester 3 collaborations

Dilan Pathirana 3 collaborations

Daniel Weindl 3 collaborations

Erika Dudkin 3 collaborations

Elba Raimúndez 3 collaborations

Eyob Girma 2 collaborations

Addisu Gize 2 collaborations

Michael Hoelscher 2 collaborations

Rebecca Kisch 2 collaborations

Raquel Rubio-Acero 2 collaborations

Daniel Yilma 2 collaborations

Ahmed Zeynudin 2 collaborations

Paul Stapor 2 collaborations

Yannik Schälte 2 collaborations

Fabian Fröhlich 2 collaborations

Lara Fuhrmann 2 collaborations

Polina Lakrisenko 2 collaborations

Philipp Städter 2 collaborations

Dantong Wang 2 collaborations

Jakob Vanhoefer 2 collaborations

Birhanemeskel Tegene 1 collaboration

Gadissa Bedada Hundie 1 collaboration

Wondewosen Tsegaye Sime 1 collaboration

Rozina Ambachew 1 collaboration

Alganesh Gebreyohanns 1 collaboration

Mahteme Bekele 1 collaboration

Abhishek Bakuli 1 collaboration

Lorenzo Contento 1 collaboration

Wondimagegn Adissu 1 collaboration

Maximilian Muenchhoff 1 collaboration

Alexander Graf 1 collaboration

Stefan Krebs 1 collaboration

Sisay Sirgu Betizazu 1 collaboration

Bereket Fantahun 1 collaboration

Delayehu Bekele 1 collaboration

Mulatu Gashaw 1 collaboration

Ivana Paunovic 1 collaboration

Helmut Blum 1 collaboration

Karina Wallrafen-Sam 1 collaboration

Gemeda Abebe 1 collaboration

Zeleke Mekonnen 1 collaboration

Melkamu Berhane 1 collaboration

Mulusew Gerbaba 1 collaboration

Sultan Suleman 1 collaboration

Yoseph Mamo 1 collaboration

Temesgen Kabeta Chala 1 collaboration

Christoph Wierling 1 collaboration

Bodo M H Lange 1 collaboration

Frank T Bergmann 1 collaboration

Tacio Camba 1 collaboration

Janine Egert 1 collaboration

Adrian L Hauber 1 collaboration

Svenja Kemmer 1 collaboration

Carolin Loos 1 collaboration

Wolfgang Müller 1 collaboration

Lukas Refisch 1 collaboration

Marcus Rosenblatt 1 collaboration

Paul L Stapor 1 collaboration

Franz-Georg Wieland 1 collaboration

Julio R Banga 1 collaboration

Jens Timmer 1 collaboration

Alejandro F Villaverde 1 collaboration

Sven Sahle 1 collaboration

Clemens Kreutz 1 collaboration

Paul J Jost 1 collaboration

Stephan Grein 1 collaboration

Domagoj Doresic 1 collaboration

Emad Alamoudi 1 collaboration

Fan Bai 1 collaboration