Thomas Junier

Affiliations

d Swiss Institute of Bioinformatics Geneva , Switzerland.
e Global Health Institute, School of Life Sciences , École Polytechnique Fédérale de Lausanne Lausanne , Switzerland.

Publications (16)

Detection of dicistroviruses RNA in blood of febrile Tanzanian children.

Emerging microbes & infections

Avec: Samuel Cordey , Florian Laubscher , Mary-Anne Hartley , Thomas Junier , Francisco J Pérez-Rodriguez , Kristina Keitel , Gael Vieille , Josephine Samaka , Tarsis Mlaganile , Frank Kagoro , Noémie Boillat-Blanco , Zainab Mbarack , Mylène Docquier , Francisco Brito , Daniel Eibach , Jürgen May , Peter Sothmann , Cassandra Aldrich , John Lusingu , Caroline Tapparel , Valérie D'Acremont , Laurent Kaiser

Remedial Treatment of Corroded Iron Objects by Environmental

Applied and environmental microbiology

Avec: Wafa M Kooli , Thomas Junier , Migun Shakya , Mathilde Monachon , Karen W Davenport , Kaushik Vaideeswaran , Alexandre Vernudachi , Ivan Marozau , Teddy Monrouzeau , Cheryl D Gleasner , Kim McMurry , Reto Lienhard , Lucien Rufener , Jean-Luc Perret , Olha Sereda , Patrick S Chain , Edith Joseph , Pilar Junier

Virosaurus A Reference to Explore and Capture Virus Genetic Diversity.

Viruses

Avec: Anne Gleizes , Florian Laubscher , Nicolas Guex , Christian Iseli , Thomas Junier , Samuel Cordey , Jacques Fellay , Ioannis Xenarios , Laurent Kaiser , Philippe Le Mercier

Joint host-pathogen genomic analysis identifies hepatitis B virus mutations associated with human NTCP and HLA class I variation.

American journal of human genetics

Avec: Zhi Ming Xu , Gnimah Eva Gnouamozi , Sina Rüeger , Patrick R Shea , Maria Buti , Henry Ly Chan , Patrick Marcellin , Dylan Lawless , Olivier Naret , Matthias Zeller , Arne Schneuing , Andreas Scheck , Thomas Junier , Darius Moradpour , Ondrej Podlaha , Vithika Suri , Anuj Gaggar , Mani Subramanian , Bruno Correia , David Gfeller , Stephan Urban , Jacques Fellay

Temporal and spatial changes in the abundance of antibiotic resistance gene markers in a wastewater treatment plant.

Water environment research : a research publication of the Water Environment Federation

Avec: Guillaume Cailleau , Thomas Junier , Christophe Paul , Mathilda Fatton , Andrea Corona-Ramirez , Ophelie Gning , Karin Beck , Jacques Vidal , Helmut Bürgmann , Pilar Junier

Cryptosporulation in Kurthia spp. forces a rethinking of asporogenesis in Firmicutes.

Environmental microbiology

Avec: Mathilda Fatton , Sevasti Filippidou , Thomas Junier , Guillaume Cailleau , Matthieu Berge , Daniel Poppleton , Thorsten B Blum , Marek Kaminek , Adolfo Odriozola , Jochen Blom , Shannon L Johnson , Jan Pieter Abrahams , Patrick S Chain , Simonetta Gribaldo , Elitza I Tocheva , Benoît Zuber , Patrick H Viollier , Pilar Junier

Viral Genetic Determinants of Prolonged Respiratory Syncytial Virus Infection Among Infants in a Healthy Term Birth Cohort.

The Journal of infectious diseases

Avec: Dylan Lawless , Christopher G McKennan , Suman R Das , Thomas Junier , Zhi Ming Xu , Larry J Anderson , Tebeb Gebretsadik , Meghan H Shilts , Emma Larkin , Christian Rosas-Salazar , James D Chappell , Jacques Fellay , Tina V Hartert

Assessment of fungal spores and spore-like diversity in environmental samples by targeted lysis.

BMC microbiology

Avec: Andrea Corona Ramirez , Danaé Bregnard , Thomas Junier , Guillaume Cailleau , Cristina Dorador , Saskia Bindschedler , Pilar Junier

One-Step Soft Agar Enrichment and Isolation of Human Lung Bacteria Inhibiting the Germination of

Microorganisms

Avec: Fabio Palmieri , Jérémy Diserens , Manon Gresse , Margo Magnin , Julina Helle , Benoît Salamin , Lorenzo Bisanti , Eric Bernasconi , Julie Pernot , Apiha Shanmuganathan , Aurélien Trompette , Christophe von Garnier , Thomas Junier , Samuel Neuenschwander , Saskia Bindschedler , Marco Pagni , Angela Koutsokera , Niki Ubags , Pilar Junier

Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial.

Genes

Avec: Thomas Junier , Michael Huber , Stefan Schmutz , Verena Kufner , Osvaldo Zagordi , Stefan Neuenschwander , Alban Ramette , Jakub Kubacki , Claudia Bachofen , Weihong Qi , Florian Laubscher , Samuel Cordey , Laurent Kaiser , Christian Beuret , Valérie Barbié , Jacques Fellay , Aitana Lebrand

Adaptive Strategies in a Poly-Extreme Environment: Differentiation of Vegetative Cells in

Frontiers in microbiology

Avec: Sevasti Filippidou , Thomas Junier , Tina Wunderlin , Wafa M Kooli , Ilona Palmieri , Andrej Al-Dourobi , Veronica Molina , Reto Lienhard , Jorge E Spangenberg , Shannon L Johnson , Patrick S G Chain , Cristina Dorador , Pilar Junier

Bacterial spores, from ecology to biotechnology.

Advances in applied microbiology

Avec: Christophe Paul , Sevasti Filippidou , Isha Jamil , Wafa Kooli , Geoffrey L House , Aislinn Estoppey , Mathilda Hayoz , Thomas Junier , Fabio Palmieri , Tina Wunderlin , Anael Lehmann , Saskia Bindschedler , Torsten Vennemann , Patrick S G Chain , Pilar Junier

Comparison of the plant growth-promotion performance of a consortium of Bacilli inoculated as endospores or as vegetative cells.

FEMS microbiology ecology

Avec: Isha Hashmi , Christophe Paul , Andrej Al-Dourobi , Frederic Sandoz , Priscilla Deschamps , Thomas Junier , Pilar Junier , Saskia Bindschedler

Widespread bacterial diversity within the bacteriome of fungi.

Communications biology

Avec: Aaron J Robinson , Geoffrey L House , Demosthenes P Morales , Julia M Kelliher , La Verne Gallegos-Graves , Erick S LeBrun , Karen W Davenport , Fabio Palmieri , Andrea Lohberger , Danaé Bregnard , Aislinn Estoppey , Matteo Buffi , Christophe Paul , Thomas Junier , Vincent Hervé , Guillaume Cailleau , Simone Lupini , Hang N Nguyen , Amy O Zheng , Luciana Jandelli Gimenes , Saskia Bindschedller , Debora F Rodrigues , James H Werner , Jamey D Young , Pilar Junier , Patrick S G Chain

Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi.

FEMS microbiology ecology

Avec: Pilar Junier , Guillaume Cailleau , Ilona Palmieri , Celine Vallotton , Olivia C Trautschold , Thomas Junier , Christophe Paul , Danae Bregnard , Fabio Palmieri , Aislinn Estoppey , Matteo Buffi , Andrea Lohberger , Aaron Robinson , Julia M Kelliher , Karen Davenport , Geoffrey L House , Demosthenes Morales , La Verne Gallegos-Graves , Armand E K Dichosa , Simone Lupini , Hang N Nguyen , Jamey D Young , Debora F Rodrigues , A Nicholas G Parra-Vasquez , Saskia Bindschedler , Patrick S G Chain

Blood virosphere in febrile Tanzanian children.

Emerging microbes & infections

Avec: Samuel Cordey , Florian Laubscher , Mary-Anne Hartley , Thomas Junier , Kristina Keitel , Mylène Docquier , Nicolas Guex , Christian Iseli , Gael Vieille , Philippe Le Mercier , Anne Gleizes , Josephine Samaka , Tarsis Mlaganile , Frank Kagoro , John Masimba , Zamzam Said , Hosiana Temba , Gasser H Elbanna , Caroline Tapparel , Marie-Celine Zanella , Ioannis Xenarios , Jacques Fellay , Valérie D'Acremont , Laurent Kaiser

Réseau de co-auteurs

Pilar Junier 10 collaborations

Jacques Fellay 5 collaborations

Guillaume Cailleau 5 collaborations

Christophe Paul 5 collaborations

Saskia Bindschedler 5 collaborations

Samuel Cordey 4 collaborations

Florian Laubscher 4 collaborations

Laurent Kaiser 4 collaborations

Fabio Palmieri 4 collaborations

Patrick S G Chain 4 collaborations

Sevasti Filippidou 3 collaborations

Geoffrey L House 3 collaborations

Aislinn Estoppey 3 collaborations

Mary-Anne Hartley 2 collaborations

Kristina Keitel 2 collaborations

Gael Vieille 2 collaborations

Josephine Samaka 2 collaborations

Tarsis Mlaganile 2 collaborations

Frank Kagoro 2 collaborations

Mylène Docquier 2 collaborations

Caroline Tapparel 2 collaborations

Valérie D'Acremont 2 collaborations

Wafa M Kooli 2 collaborations

Karen W Davenport 2 collaborations

Reto Lienhard 2 collaborations

Patrick S Chain 2 collaborations

Anne Gleizes 2 collaborations

Nicolas Guex 2 collaborations

Christian Iseli 2 collaborations

Ioannis Xenarios 2 collaborations

Philippe Le Mercier 2 collaborations

Zhi Ming Xu 2 collaborations

Dylan Lawless 2 collaborations

Mathilda Fatton 2 collaborations

Shannon L Johnson 2 collaborations

Danaé Bregnard 2 collaborations

Cristina Dorador 2 collaborations

Tina Wunderlin 2 collaborations

Ilona Palmieri 2 collaborations

Andrej Al-Dourobi 2 collaborations

Julia M Kelliher 2 collaborations

La Verne Gallegos-Graves 2 collaborations

Andrea Lohberger 2 collaborations

Matteo Buffi 2 collaborations

Simone Lupini 2 collaborations

Hang N Nguyen 2 collaborations

Debora F Rodrigues 2 collaborations

Jamey D Young 2 collaborations

Francisco J Pérez-Rodriguez 1 collaboration

Noémie Boillat-Blanco 1 collaboration

Zainab Mbarack 1 collaboration

Francisco Brito 1 collaboration

Daniel Eibach 1 collaboration

Jürgen May 1 collaboration

Peter Sothmann 1 collaboration

Cassandra Aldrich 1 collaboration

John Lusingu 1 collaboration

Migun Shakya 1 collaboration

Mathilde Monachon 1 collaboration

Kaushik Vaideeswaran 1 collaboration

Alexandre Vernudachi 1 collaboration

Ivan Marozau 1 collaboration

Teddy Monrouzeau 1 collaboration

Cheryl D Gleasner 1 collaboration

Kim McMurry 1 collaboration

Lucien Rufener 1 collaboration

Jean-Luc Perret 1 collaboration

Olha Sereda 1 collaboration

Edith Joseph 1 collaboration

Gnimah Eva Gnouamozi 1 collaboration

Sina Rüeger 1 collaboration

Patrick R Shea 1 collaboration

Maria Buti 1 collaboration

Henry Ly Chan 1 collaboration

Patrick Marcellin 1 collaboration

Olivier Naret 1 collaboration

Matthias Zeller 1 collaboration

Arne Schneuing 1 collaboration

Andreas Scheck 1 collaboration

Darius Moradpour 1 collaboration

Ondrej Podlaha 1 collaboration

Vithika Suri 1 collaboration

Anuj Gaggar 1 collaboration

Mani Subramanian 1 collaboration

Bruno Correia 1 collaboration

David Gfeller 1 collaboration

Stephan Urban 1 collaboration

Andrea Corona-Ramirez 1 collaboration

Ophelie Gning 1 collaboration

Karin Beck 1 collaboration

Jacques Vidal 1 collaboration

Helmut Bürgmann 1 collaboration

Matthieu Berge 1 collaboration

Daniel Poppleton 1 collaboration

Thorsten B Blum 1 collaboration

Marek Kaminek 1 collaboration

Adolfo Odriozola 1 collaboration

Jochen Blom 1 collaboration

Jan Pieter Abrahams 1 collaboration

Simonetta Gribaldo 1 collaboration

Elitza I Tocheva 1 collaboration

Benoît Zuber 1 collaboration

Patrick H Viollier 1 collaboration

Christopher G McKennan 1 collaboration

Suman R Das 1 collaboration

Larry J Anderson 1 collaboration

Tebeb Gebretsadik 1 collaboration

Meghan H Shilts 1 collaboration

Emma Larkin 1 collaboration

Christian Rosas-Salazar 1 collaboration

James D Chappell 1 collaboration

Tina V Hartert 1 collaboration

Andrea Corona Ramirez 1 collaboration

Jérémy Diserens 1 collaboration

Manon Gresse 1 collaboration

Margo Magnin 1 collaboration

Julina Helle 1 collaboration

Benoît Salamin 1 collaboration

Lorenzo Bisanti 1 collaboration

Eric Bernasconi 1 collaboration

Julie Pernot 1 collaboration

Apiha Shanmuganathan 1 collaboration

Aurélien Trompette 1 collaboration

Christophe von Garnier 1 collaboration

Samuel Neuenschwander 1 collaboration

Marco Pagni 1 collaboration

Angela Koutsokera 1 collaboration

Niki Ubags 1 collaboration

Michael Huber 1 collaboration

Stefan Schmutz 1 collaboration

Verena Kufner 1 collaboration

Osvaldo Zagordi 1 collaboration

Stefan Neuenschwander 1 collaboration

Alban Ramette 1 collaboration

Jakub Kubacki 1 collaboration

Claudia Bachofen 1 collaboration

Weihong Qi 1 collaboration

Christian Beuret 1 collaboration

Valérie Barbié 1 collaboration

Aitana Lebrand 1 collaboration

Veronica Molina 1 collaboration

Jorge E Spangenberg 1 collaboration

Isha Jamil 1 collaboration

Wafa Kooli 1 collaboration

Mathilda Hayoz 1 collaboration

Anael Lehmann 1 collaboration

Torsten Vennemann 1 collaboration

Isha Hashmi 1 collaboration

Frederic Sandoz 1 collaboration

Priscilla Deschamps 1 collaboration

Aaron J Robinson 1 collaboration

Demosthenes P Morales 1 collaboration

Erick S LeBrun 1 collaboration

Vincent Hervé 1 collaboration

Amy O Zheng 1 collaboration

Luciana Jandelli Gimenes 1 collaboration

Saskia Bindschedller 1 collaboration

James H Werner 1 collaboration

Celine Vallotton 1 collaboration

Olivia C Trautschold 1 collaboration

Danae Bregnard 1 collaboration

Aaron Robinson 1 collaboration

Karen Davenport 1 collaboration

Demosthenes Morales 1 collaboration

Armand E K Dichosa 1 collaboration

A Nicholas G Parra-Vasquez 1 collaboration

John Masimba 1 collaboration

Zamzam Said 1 collaboration

Hosiana Temba 1 collaboration

Gasser H Elbanna 1 collaboration

Marie-Celine Zanella 1 collaboration