Polyphasic approach using multilocus analyses supports the establishment of the new aerophytic cyanobacterial genus Pycnacronema (Coleofasciculaceae, Oscillatoriales).

16S rRNA 16S-23S ITS Brazil morphological evaluation phylogenetic analysis rbcL rpoC1 taxonomy

Journal

Journal of phycology
ISSN: 1529-8817
Titre abrégé: J Phycol
Pays: United States
ID NLM: 9882935

Informations de publication

Date de publication:
02 2019
Historique:
received: 17 08 2017
accepted: 11 09 2018
pubmed: 27 10 2018
medline: 23 2 2020
entrez: 27 10 2018
Statut: ppublish

Résumé

A new Phormidium-like genus was found during an investigation of Oscillatoriales diversity in Brazil. Eight aerophytic populations from south and southeastern regions were isolated in monospecific cultures and submitted to polyphasic evaluation. The populations presented homogeneous morphology with straight trichomes, not attenuated, and apical cell with thickened cell wall. Phylogenetic analyses based on 16S rRNA gene sequences showed that these populations, plus the Brazilian strain Phomidium sp. B-Tom from GenBank, formed a highly supported and distinctive clade, which corresponds to the new genus Pycnacronema, comprising six new species: P. brasiliensis (type species), P. arboriculum, P. conicum, P. marmoreum, P. rubrum, and P. savannensis. These results were confirmed and supported by rpoC1 and rbcL genes evaluated independently and by the concatenated analysis of 16S rRNA, rpoC1 and rbcL genes (for all species but P. savannensis). Secondary structures of the D1-D1', box-B, and V3 regions of the internal transcribed spacer were informative at specific level, being conserved in P. brasiliensis and variable among the other strains, also confirming the phylogenetic analyses. The generic name and specific epithets of the new taxa are proposed under the provisions of the International Code of Nomenclature of algae, fungi, and plants.

Identifiants

pubmed: 30362579
doi: 10.1111/jpy.12805
doi:

Substances chimiques

DNA, Bacterial 0
DNA, Ribosomal Spacer 0
RNA, Ribosomal, 16S 0

Banques de données

GENBANK
['NC005125']

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

146-159

Subventions

Organisme : São Paulo Research Foundation
ID : 2010/09686-4
Pays : International
Organisme : São Paulo Research Foundation
ID : 2012/19468-0
Pays : International
Organisme : São Paulo Research Foundation
ID : 2013/08207-3
Pays : International

Informations de copyright

© 2018 Phycological Society of America.

Auteurs

Mariéllen Dornelles Martins (MD)

Zoology and Botany Department, São José do Rio Preto campus (IBILCE), São Paulo State University (UNESP), R. Cristóvão Colombo, 2265 - BR15054-000, S. J. Rio Preto (SP), Brazil.

Náthali Maria Machado-de-Lima (NM)

Microbiology Graduate Program (IBILCE/UNESP), Zoology and Botany Department, São José do Rio Preto campus (IBILCE), São Paulo State University (UNESP), R. Cristóvão Colombo, 2265 - BR15054-000, S. J. Rio Preto (SP), Brazil.

Luis Henrique Zanini Branco (LHZ)

Zoology and Botany Department, São José do Rio Preto campus (IBILCE), São Paulo State University (UNESP), R. Cristóvão Colombo, 2265 - BR15054-000, S. J. Rio Preto (SP), Brazil.

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Classifications MeSH