A gene expression map of shoot domains reveals regulatory mechanisms.
Alternative Splicing
Arabidopsis
/ embryology
Arabidopsis Proteins
/ genetics
Base Sequence
GATA Transcription Factors
/ genetics
Gene Expression Profiling
Gene Expression Regulation, Developmental
/ genetics
Gene Expression Regulation, Plant
/ genetics
Gene Regulatory Networks
/ genetics
Homeodomain Proteins
/ genetics
Meristem
/ genetics
Plant Leaves
/ growth & development
Repressor Proteins
/ genetics
Sequence Analysis, RNA
Transcription Factors
/ genetics
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
11 01 2019
11 01 2019
Historique:
received:
06
08
2018
accepted:
18
12
2018
entrez:
13
1
2019
pubmed:
13
1
2019
medline:
9
2
2019
Statut:
epublish
Résumé
Gene regulatory networks control development via domain-specific gene expression. In seed plants, self-renewing stem cells located in the shoot apical meristem (SAM) produce leaves from the SAM peripheral zone. After initiation, leaves develop polarity patterns to form a planar shape. Here we compare translating RNAs among SAM and leaf domains. Using translating ribosome affinity purification and RNA sequencing to quantify gene expression in target domains, we generate a domain-specific translatome map covering representative vegetative stage SAM and leaf domains. We discuss the predicted cellular functions of these domains and provide evidence that dome seemingly unrelated domains, utilize common regulatory modules. Experimental follow up shows that the RABBIT EARS and HANABA TARANU transcription factors have roles in axillary meristem initiation. This dataset provides a community resource for further study of shoot development and response to internal and environmental signals.
Identifiants
pubmed: 30635575
doi: 10.1038/s41467-018-08083-z
pii: 10.1038/s41467-018-08083-z
pmc: PMC6329838
doi:
Substances chimiques
AT2G27250 protein, Arabidopsis
0
Arabidopsis Proteins
0
GATA Transcription Factors
0
HANABA TARANU protein, Arabidopsis
0
Homeodomain Proteins
0
RBE protein, Arabidopsis
0
Repressor Proteins
0
Transcription Factors
0
UFO protein, Arabidopsis
0
WUSCHEL protein, Arabidopsis
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
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