Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships.
B chromosome
chromosomal aberrations
chromosome painting
karyotype
oligo-FISH
Journal
Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876
Informations de publication
Date de publication:
29 01 2019
29 01 2019
Historique:
pubmed:
19
1
2019
medline:
23
3
2019
entrez:
19
1
2019
Statut:
ppublish
Résumé
Whole-chromosome painting probes were developed for each of the 10 chromosomes of maize by producing amplifiable libraries of unique sequences of oligonucleotides that can generate labeled probes through transcription reactions. These paints allow identification of individual homologous chromosomes for many applications as demonstrated in somatic root tip metaphase cells, in the pachytene stage of meiosis, and in interphase nuclei. Several chromosomal aberrations were examined as proof of concept for study of various rearrangements using probes that cover the entire chromosome and that label diverse varieties. The relationship of the supernumerary B chromosome and the normal chromosomes was examined with the finding that there is no detectable homology between any of the normal A chromosomes and the B chromosome. Combined with other chromosome-labeling techniques, a complete set of whole-chromosome oligonucleotide paints lays the foundation for future studies of the structure, organization, and evolution of genomes.
Identifiants
pubmed: 30655344
pii: 1813957116
doi: 10.1073/pnas.1813957116
pmc: PMC6358699
doi:
Substances chimiques
DNA Probes
0
Oligonucleotides
0
Types de publication
Journal Article
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
1679-1685Informations de copyright
Copyright © 2019 the Author(s). Published by PNAS.
Déclaration de conflit d'intérêts
Conflict of interest statement: K.S. and J.-M.R. are employees of Arbor Biosciences.
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