C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.
A549 Cells
Animals
Cell Line
Enhancer Elements, Genetic
Fibroblasts
/ cytology
Gene Expression Profiling
Humans
In Situ Hybridization, Fluorescence
Mice
Microfluidic Analytical Techniques
Promoter Regions, Genetic
RNA, Messenger
/ genetics
Sequence Analysis, RNA
Single-Cell Analysis
/ instrumentation
Transcription Initiation Site
Transcriptome
Transforming Growth Factor beta
/ pharmacology
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
21 01 2019
21 01 2019
Historique:
received:
11
06
2018
accepted:
19
12
2018
entrez:
22
1
2019
pubmed:
22
1
2019
medline:
6
2
2019
Statut:
epublish
Résumé
Single-cell transcriptomic profiling is a powerful tool to explore cellular heterogeneity. However, most of these methods focus on the 3'-end of polyadenylated transcripts and provide only a partial view of the transcriptome. We introduce C1 CAGE, a method for the detection of transcript 5'-ends with an original sample multiplexing strategy in the C1
Identifiants
pubmed: 30664627
doi: 10.1038/s41467-018-08126-5
pii: 10.1038/s41467-018-08126-5
pmc: PMC6341120
doi:
Substances chimiques
RNA, Messenger
0
Transforming Growth Factor beta
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
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