LiSEQ - whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe.
Animals
Cross-Sectional Studies
Dairy Products
/ microbiology
Drug Resistance, Bacterial
/ genetics
Europe
Fish Products
/ microbiology
Food Handling
Food Microbiology
Genetic Variation
Humans
Listeria monocytogenes
/ classification
Listeriosis
/ microbiology
Meat Products
/ microbiology
Virulence
/ genetics
Whole Genome Sequencing
Listeria monocytogenes
food
genetic diversity
human
phylogeny
whole-genome sequencing
Journal
Microbial genomics
ISSN: 2057-5858
Titre abrégé: Microb Genom
Pays: England
ID NLM: 101671820
Informations de publication
Date de publication:
02 2019
02 2019
Historique:
pubmed:
19
2
2019
medline:
14
9
2019
entrez:
19
2
2019
Statut:
ppublish
Résumé
We present the LiSEQ (Listeria SEQuencing) project, funded by the European Food Safety Agency (EFSA) to compare Listeria monocytogenes isolates collected in the European Union from ready-to-eat foods, compartments along the food chain (e.g. food-producing animals, food-processing environments) and humans. In this article, we report the molecular characterization of a selection of this data set employing whole-genome sequencing analysis. We present an overview of the strain diversity observed in different sampled sources, and characterize the isolates based on their virulence and resistance profile. We integrate into our analysis the global L. monocytogenes genome collection described by Moura and colleagues in 2016 to assess the representativeness of the LiSEQ collection in the context of known L. monocytogenes strain diversity.
Identifiants
pubmed: 30775964
doi: 10.1099/mgen.0.000257
pmc: PMC6421348
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
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