Classifying the Unclassified: A Phage Classification Method.
Hidden Markov Models
Inoviridae
Keywords
Myoviridae
Podoviridae
Siphoviridae
Vibrionaceae
classification
phages
protein coding sequences
vibriophages
Journal
Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722
Informations de publication
Date de publication:
24 02 2019
24 02 2019
Historique:
received:
21
12
2018
revised:
06
02
2019
accepted:
20
02
2019
entrez:
1
3
2019
pubmed:
1
3
2019
medline:
21
8
2019
Statut:
epublish
Résumé
This work reports the method ClassiPhage to classify phage genomes using sequence derived taxonomic features. ClassiPhage uses a set of phage specific Hidden Markov Models (HMMs) generated from clusters of related proteins. The method was validated on all publicly available genomes of phages that are known to infect
Identifiants
pubmed: 30813498
pii: v11020195
doi: 10.3390/v11020195
pmc: PMC6409715
pii:
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Déclaration de conflit d'intérêts
The authors declare no conflict of interest.
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