LurR is a regulator of the central lactate oxidation pathway in sulfate-reducing Desulfovibrio species.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2019
Historique:
received: 13 12 2018
accepted: 22 03 2019
entrez: 10 4 2019
pubmed: 10 4 2019
medline: 24 12 2019
Statut: epublish

Résumé

The central carbon/lactate utilization pathway in the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough, is encoded by the highly conserved operon DVU3025-3033. Our earlier in vitro genome-wide study had suggested a network of four two-component system regulators that target this large operon; however, how these four regulators control this operon was not known. Here, we probe the regulation of the lactate utilization operon with mutant strains and DNA-protein binding assays. We show that the LurR response regulator is required for optimal growth and complete lactate utilization, and that it activates the DVU3025-3033 lactate oxidation operon as well as DVU2451, a lactate permease gene, in the presence of lactate. We show by electrophoretic mobility shift assays that LurR binds to three sites in the upstream region of DVU3025, the first gene of the operon. NrfR, a response regulator that is activated under nitrite stress, and LurR share similar binding site motifs and bind the same sites upstream of DVU3025. The DVU3025 promoter also has a binding site motif (Pho box) that is bound by PhoB, a two-component response regulator activated under phosphate limitation. The lactate utilization operon, the regulator LurR, and LurR binding sites are conserved across the order Desulfovibrionales whereas possible modulation of the lactate utilization genes by additional regulators such as NrfR and PhoB appears to be limited to D. vulgaris.

Identifiants

pubmed: 30964892
doi: 10.1371/journal.pone.0214960
pii: PONE-D-18-35678
pmc: PMC6456213
doi:

Substances chimiques

Bacterial Proteins 0
Transcription Factors 0
Lactic Acid 33X04XA5AT

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0214960

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

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Auteurs

Lara Rajeev (L)

Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

Eric G Luning (EG)

Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

Grant M Zane (GM)

Department of Biochemistry, University of Missouri, Columbia, Missouri, United States of America.

Thomas R Juba (TR)

Department of Biochemistry, University of Missouri, Columbia, Missouri, United States of America.

Alexey E Kazakov (AE)

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

Pavel S Novichkov (PS)

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

Judy D Wall (JD)

Department of Biochemistry, University of Missouri, Columbia, Missouri, United States of America.

Aindrila Mukhopadhyay (A)

Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.
Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

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Classifications MeSH