Asgard archaea capable of anaerobic hydrocarbon cycling.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
23 04 2019
23 04 2019
Historique:
received:
12
12
2018
accepted:
06
03
2019
entrez:
25
4
2019
pubmed:
25
4
2019
medline:
29
5
2019
Statut:
epublish
Résumé
Large reservoirs of natural gas in the oceanic subsurface sustain complex communities of anaerobic microbes, including archaeal lineages with potential to mediate oxidation of hydrocarbons such as methane and butane. Here we describe a previously unknown archaeal phylum, Helarchaeota, belonging to the Asgard superphylum and with the potential for hydrocarbon oxidation. We reconstruct Helarchaeota genomes from metagenomic data derived from hydrothermal deep-sea sediments in the hydrocarbon-rich Guaymas Basin. The genomes encode methyl-CoM reductase-like enzymes that are similar to those found in butane-oxidizing archaea, as well as several enzymes potentially involved in alkyl-CoA oxidation and the Wood-Ljungdahl pathway. We suggest that members of the Helarchaeota have the potential to activate and subsequently anaerobically oxidize hydrothermally generated short-chain hydrocarbons.
Identifiants
pubmed: 31015394
doi: 10.1038/s41467-019-09364-x
pii: 10.1038/s41467-019-09364-x
pmc: PMC6478937
doi:
Substances chimiques
Archaeal Proteins
0
Hydrocarbons
0
Oxidoreductases
EC 1.-
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
1822Subventions
Organisme : National Science Foundation
ID : OCE-0647633
Pays : International
Organisme : National Science Foundation
ID : OCE-1357238
Pays : International
Organisme : US Department of Energy
ID : DE-AC02-05CH11231
Pays : International
Références
Syst Biol. 2018 Mar 01;67(2):216-235
pubmed: 28950365
Bioinformatics. 2010 Jun 15;26(12):1569-71
pubmed: 20421198
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Nat Commun. 2018 Nov 27;9(1):4999
pubmed: 30479325
ISME J. 2016 Jul;10(7):1696-705
pubmed: 26824177
Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1420-5
pubmed: 11805300
Science. 2015 Oct 23;350(6259):434-8
pubmed: 26494757
Genome Biol. 2009;10(8):R85
pubmed: 19698104
Nat Microbiol. 2019 Jul;4(7):1138-1148
pubmed: 30936488
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
Sci Rep. 2016 Sep 27;6:34212
pubmed: 27670643
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Science. 2017 Aug 11;357(6351):
pubmed: 28798101
Front Microbiol. 2013 Jul 25;4:207
pubmed: 23898326
Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):E2846-55
pubmed: 23027979
Environ Microbiol. 2016 Sep;18(9):3073-91
pubmed: 26971539
Nat Microbiol. 2018 Jul;3(7):836-843
pubmed: 29807988
Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5632-7
pubmed: 11929975
Chem Rev. 2007 Oct;107(10):4206-72
pubmed: 17927159
Philos Trans R Soc Lond B Biol Sci. 2008 Apr 27;363(1496):1463-72
pubmed: 18192187
Nat Microbiol. 2016 Oct 03;1:16170
pubmed: 27694807
Environ Microbiol Rep. 2016 Feb;8(1):150-61
pubmed: 26637109
Bioinformatics. 2014 May 1;30(9):1236-40
pubmed: 24451626
BMC Evol Biol. 2010 Jul 13;10:210
pubmed: 20626897
Nature. 2015 Oct 22;526(7574):587-90
pubmed: 26490622
Nat Rev Microbiol. 2008 Aug;6(8):579-91
pubmed: 18587410
Nat Methods. 2014 Nov;11(11):1144-6
pubmed: 25218180
Front Microbiol. 2013 Oct 04;4:299
pubmed: 24109477
Bioinformatics. 2012 Jul 15;28(14):1823-9
pubmed: 22556368
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5
pubmed: 17526522
Mol Biol Evol. 2004 Jun;21(6):1095-109
pubmed: 15014145
FEMS Microbiol Rev. 2001 Aug;25(4):455-501
pubmed: 11524134
Nature. 2015 May 14;521(7551):173-179
pubmed: 25945739
Mol Biol Evol. 2007 Sep;24(9):2139-50
pubmed: 17652333
J Exp Bot. 2008;59(7):1515-24
pubmed: 18281717
Nat Rev Microbiol. 2014 Sep;12(9):635-45
pubmed: 25118885
Nat Commun. 2016 Oct 24;7:13219
pubmed: 27774985
Bioinformatics. 2012 Jun 15;28(12):1647-9
pubmed: 22543367
Microbiome. 2017 Aug 23;5(1):106
pubmed: 28835260
Trends Genet. 2006 Apr;22(4):225-31
pubmed: 16490279
Nature. 2016 Nov 17;539(7629):396-401
pubmed: 27749816
BMC Bioinformatics. 2010 Aug 18;11:431
pubmed: 20718988
Nat Rev Microbiol. 2009 Aug;7(8):568-77
pubmed: 19609258
Genome Res. 2015 Jul;25(7):1043-55
pubmed: 25977477
Nat Rev Microbiol. 2017 Nov 10;15(12):711-723
pubmed: 29123225
Proc Biol Sci. 2013 Aug 28;280(1769):20131755
pubmed: 23986111
Bioinformatics. 2009 Aug 1;25(15):1972-3
pubmed: 19505945
Environ Microbiol. 2015 Jul;17(7):2228-38
pubmed: 25331558
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W445-51
pubmed: 22645317
Nucleic Acids Res. 2012 Jan;40(Database issue):D115-22
pubmed: 22194640
Life (Basel). 2015 Mar 10;5(1):818-40
pubmed: 25764277
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402
pubmed: 9254694
Front Microbiol. 2014 Jul 31;5:362
pubmed: 25132832
BMC Bioinformatics. 2010 Mar 08;11:119
pubmed: 20211023
PeerJ. 2014 Jan 09;2:e243
pubmed: 24482762
Nucleic Acids Res. 2010 Jan;38(Database issue):D227-33
pubmed: 19892822
Eur J Biochem. 1994 Jul 15;223(2):503-11
pubmed: 8055920
Nature. 2017 Jan 19;541(7637):353-358
pubmed: 28077874
Chem Rev. 2007 Feb;107(2):486-513
pubmed: 17261072
PeerJ. 2015 Oct 08;3:e1319
pubmed: 26500826
Bioinformatics. 2014 Jul 15;30(14):2068-9
pubmed: 24642063
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Syst Biol. 2010 May;59(3):307-21
pubmed: 20525638
PeerJ. 2015 Aug 27;3:e1165
pubmed: 26336640
Mol Biol Evol. 2013 May;30(5):1188-95
pubmed: 23418397
Front Microbiol. 2016 Jan 29;7:17
pubmed: 26858698