Pervasive hybridizations in the history of wheat relatives.
Journal
Science advances
ISSN: 2375-2548
Titre abrégé: Sci Adv
Pays: United States
ID NLM: 101653440
Informations de publication
Date de publication:
05 2019
05 2019
Historique:
received:
31
10
2018
accepted:
20
03
2019
entrez:
4
5
2019
pubmed:
3
5
2019
medline:
6
5
2020
Statut:
epublish
Résumé
Cultivated wheats are derived from an intricate history of three genomes, A, B, and D, present in both diploid and polyploid species. It was recently proposed that the D genome originated from an ancient hybridization between the A and B lineages. However, this result has been questioned, and a robust phylogeny of wheat relatives is still lacking. Using transcriptome data from all diploid species and a new methodological approach, our comprehensive phylogenomic analysis revealed that more than half of the species descend from an ancient hybridization event but with a more complex scenario involving a different parent than previously thought-
Identifiants
pubmed: 31049399
doi: 10.1126/sciadv.aav9188
pii: aav9188
pmc: PMC6494498
doi:
Substances chimiques
DNA Transposable Elements
0
DNA, Complementary
0
RNA, Messenger
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
eaav9188Références
Syst Biol. 2017 Mar 01;66(2):283-298
pubmed: 27780899
Am J Bot. 2005 Nov;92(11):1887-98
pubmed: 21646106
Mol Biol Evol. 2001 Jun;18(6):1103-16
pubmed: 11371598
Mol Biol Evol. 2013 Aug;30(8):1745-50
pubmed: 23699471
Syst Biol. 2018 Sep 1;67(5):821-829
pubmed: 29562307
Bioinformatics. 2010 Oct 1;26(19):2460-1
pubmed: 20709691
Mol Biol Evol. 2014 Jul;31(7):1923-8
pubmed: 24723423
Mol Biol Evol. 2016 Jul;33(7):1654-68
pubmed: 27189547
BMC Evol Biol. 2017 Jun 16;17(1):141
pubmed: 28622761
Theor Popul Biol. 2009 Feb;75(1):35-45
pubmed: 19038278
Syst Biol. 2015 Jul;64(4):651-62
pubmed: 25888025
Mol Biol Evol. 2017 Dec 1;34(12):3292-3298
pubmed: 28961984
Genome Res. 2009 Jun;19(6):1117-23
pubmed: 19251739
Bioinformatics. 2004 Jan 22;20(2):289-90
pubmed: 14734327
Genetics. 1998 Jan;148(1):423-34
pubmed: 9475752
Mol Biol Evol. 2011 Aug;28(8):2239-52
pubmed: 21325092
Evolution. 2008 Feb;62(2):266-75
pubmed: 18039323
New Phytol. 2015 Oct;208(1):4-8
pubmed: 25612061
Mol Biol Evol. 1988 Sep;5(5):568-83
pubmed: 3193878
PLoS Biol. 2016 Feb 12;14(2):e1002379
pubmed: 26871574
BMC Evol Biol. 2011 Jun 24;11:181
pubmed: 21702931
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
New Phytol. 2015 Oct;208(1):9-10
pubmed: 25996653
New Phytol. 2015 Oct;208(1):11-2
pubmed: 26147650
Mol Phylogenet Evol. 2006 Apr;39(1):70-82
pubmed: 16504543
Nat Genet. 2016 Sep;48(9):1077-82
pubmed: 27428747
Mol Ecol Resour. 2017 May;17(3):565-580
pubmed: 27487989
Science. 2014 Jul 18;345(6194):1250092
pubmed: 25035499
PLoS Genet. 2017 May 22;13(5):e1006799
pubmed: 28531201
BMC Evol Biol. 2019 May 30;19(1):112
pubmed: 31146685
PLoS One. 2011;6(9):e22594
pubmed: 21949676
New Phytol. 2014 Nov;204(3):704-714
pubmed: 25059383
Trends Ecol Evol. 2013 Dec;28(12):719-28
pubmed: 24094331
BMC Bioinformatics. 2004 Aug 19;5:113
pubmed: 15318951
BMC Bioinformatics. 2004 Nov 30;5:187
pubmed: 15571632
BMC Bioinformatics. 2006 Apr 04;7:188
pubmed: 16594991
Genome Res. 1999 Sep;9(9):868-77
pubmed: 10508846
Proc Natl Acad Sci U S A. 1998 Sep 29;95(20):11757-62
pubmed: 9751738
Plant J. 2017 Oct;92(2):317-330
pubmed: 28776783
Bioinformatics. 2010 Jun 15;26(12):i115-23
pubmed: 20529895
Genome. 1996 Apr;39(2):293-306
pubmed: 18469894
BMC Bioinformatics. 2011 May 15;12:159
pubmed: 21575167
New Phytol. 2017 Feb;213(3):1477-1486
pubmed: 27551821
Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8133-8
pubmed: 12060759