RedoxiBase: A database for ROS homeostasis regulated proteins.
Catalase
Multigenic family
Oxido-reductases
Peroxidases
ROS homeostasis
Journal
Redox biology
ISSN: 2213-2317
Titre abrégé: Redox Biol
Pays: Netherlands
ID NLM: 101605639
Informations de publication
Date de publication:
09 2019
09 2019
Historique:
received:
22
05
2019
accepted:
05
06
2019
pubmed:
23
6
2019
medline:
29
2
2020
entrez:
23
6
2019
Statut:
ppublish
Résumé
We present a new database, specifically devoted to ROS homeostasis regulated proteins. This database replaced our previous database, the PeroxiBase, which was focused only on various peroxidase families. The addition of 20 new protein families related with ROS homeostasis justifies the new name for this more complex and comprehensive database as RedoxiBase. Besides enlarging the focus of the database, new analysis tools and functionalities have been developed and integrated through the web interface, with which the users can now directly access to orthologous sequences and see the chromosomal localization of sequences when available. OrthoMCL tool, completed with a post-treatment process, provides precise predictions of orthologous gene groups for the sequences present in this database. In order to explore and analyse orthogroups results, taxonomic visualization of organisms containing sequence of a specific orthogroup as well as chromosomal distribution of the orthogroup with one or two organisms have been included.
Identifiants
pubmed: 31228650
pii: S2213-2317(19)30580-4
doi: 10.1016/j.redox.2019.101247
pmc: PMC6597783
pii:
doi:
Substances chimiques
Reactive Oxygen Species
0
Oxidoreductases
EC 1.-
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
101247Subventions
Organisme : Austrian Science Fund FWF
ID : P 31707
Pays : Austria
Informations de copyright
Copyright © 2019 The Authors. Published by Elsevier B.V. All rights reserved.
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