Ecological and evolutionary patterns in the enigmatic protist genus Percolomonas (Heterolobosea; Discoba) from diverse habitats.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2019
Historique:
received: 15 04 2019
accepted: 14 08 2019
entrez: 30 8 2019
pubmed: 30 8 2019
medline: 4 3 2020
Statut: epublish

Résumé

The heterotrophic flagellate Percolomonas cosmopolitus (Heterolobosea) is often observed in saline habitats worldwide, from coastal waters to saturated brines. However, only two cultures assigned to this morphospecies have been examined using molecular methods, and their 18S rRNA gene sequences are extremely different. Further the salinity tolerances of individual strains are unknown. Thus, our knowledge on the autecology and diversity in this morphospecies is deficient. Here, we report 18S rRNA gene data on seven strains similar to P. cosmopolitus from seven geographically remote locations (New Zealand, Kenya, Korea, Poland, Russia, Spain, and the USA) with sample salinities ranging from 4‰ to 280‰, and compare morphology and salinity tolerance of the nine available strains. Percolomonas cosmopolitus-like strains show few-to-no consistent morphological differences, and form six clades separated by often extremely large 18S rRNA gene divergences (up to 42.4%). Some strains grow best at salinities from 75 to 125‰ and represent halophiles. All but one of these belong to two geographically heterogeneous clusters that form a robust monophyletic group in phylogenetic trees; this likely represents an ecologically specialized subclade of halophiles. Our results suggest that P. cosmopolitus is a cluster of several cryptic species (at least), which are unlikely to be distinguished by geography. Interestingly, the 9 Percolomonas strains formed a clade in 18S rRNA gene phylogenies, unlike most previous analyses based on two sequences.

Identifiants

pubmed: 31465455
doi: 10.1371/journal.pone.0216188
pii: PONE-D-19-10704
pmc: PMC6715209
doi:

Substances chimiques

RNA, Ribosomal, 18S 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0216188

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Références

Protist. 1999 Oct;150(3):229-33
pubmed: 10575696
Protist. 1999 Dec;150(4):363-8
pubmed: 10714770
Science. 2002 May 10;296(5570):1061-3
pubmed: 12004115
Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7163-8
pubmed: 12759476
J Eukaryot Microbiol. 2004 Jul-Aug;51(4):402-16
pubmed: 15352322
J Eukaryot Microbiol. 2004 Sep-Oct;51(5):575-81
pubmed: 15537093
Protist. 2005 Jun;156(1):97-112
pubmed: 16048136
Protist. 2005 Nov;156(3):317-33
pubmed: 16325544
Bioinformatics. 2006 Nov 1;22(21):2688-90
pubmed: 16928733
Appl Environ Microbiol. 2006 Oct;72(10):6638-43
pubmed: 17021215
Trends Ecol Evol. 2007 Mar;22(3):148-55
pubmed: 17129636
Protist. 2007 Jul;158(3):397-413
pubmed: 17576098
Eur J Protistol. 2008 Nov;44(4):241-53
pubmed: 18403188
Saline Systems. 2008 Apr 15;4:2
pubmed: 18412960
J Eukaryot Microbiol. 2008 Nov-Dec;55(6):501-9
pubmed: 19120795
Protist. 2009 May;160(2):265-83
pubmed: 19121603
Mol Phylogenet Evol. 2010 Apr;55(1):113-22
pubmed: 20004728
Environ Microbiol. 2010 May;12(5):1173-84
pubmed: 20132281
Protist. 2011 Nov;162(5):691-709
pubmed: 21723194
Extremophiles. 2012 Jan;16(1):161-4
pubmed: 22134681
Protist. 2012 Nov;163(6):807-31
pubmed: 22192530
J Mol Evol. 2011 Dec;73(5-6):266-72
pubmed: 22258433
Eur J Protistol. 2012 Nov;48(4):263-73
pubmed: 22342133
Syst Biol. 2012 May;61(3):539-42
pubmed: 22357727
J Eukaryot Microbiol. 2012 Nov-Dec;59(6):601-13
pubmed: 22888835
Protist. 2013 Mar;164(2):272-86
pubmed: 23021907
BMC Evol Biol. 2012 Oct 26;12:209
pubmed: 23102148
J Eukaryot Microbiol. 2013 Jul-Aug;60(4):350-62
pubmed: 23648118
Mol Ecol. 2013 Sep;22(17):4562-75
pubmed: 23927432
Mol Ecol. 2013 Oct;22(20):5172-84
pubmed: 23998707
Am J Bot. 2014 Feb;101(2):267-86
pubmed: 24509794
Protist. 2014 Mar;165(2):196-207
pubmed: 24657945
Protist. 2014 Aug;165(4):542-67
pubmed: 24999602
Bioessays. 2014 Oct;36(10):950-9
pubmed: 25156897
J Eukaryot Microbiol. 2015 Mar-Apr;62(2):227-38
pubmed: 25227416
Protist. 2014 Dec;165(6):779-804
pubmed: 25460230
Protist. 2015 Feb;166(1):78-92
pubmed: 25569601
Protist. 2015 Sep;166(4):422-37
pubmed: 26202993
J Eukaryot Microbiol. 2016 Jan-Feb;63(1):100-11
pubmed: 26291784
J Phycol. 2014 Feb;50(1):14-25
pubmed: 26988005
J Phycol. 2014 Feb;50(1):140-8
pubmed: 26988015
J Phycol. 2013 Feb;49(1):82-91
pubmed: 27008391
Protist. 2016 Nov;167(5):411-424
pubmed: 27541705
J Eukaryot Microbiol. 2018 Jul;65(4):556-570
pubmed: 29266533
J Eukaryot Microbiol. 2019 Jan;66(1):120-139
pubmed: 29791056
J Eukaryot Microbiol. 2019 Mar;66(2):221-231
pubmed: 29938869
Gene. 1988 Nov 30;71(2):491-9
pubmed: 3224833

Auteurs

Denis V Tikhonenkov (DV)

Papanin Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Russia.
Zoological Institute, Russian Academy of Sciences, Saint Petersburg, Russia.

Soo Hwan Jhin (SH)

Department of Oceanography, Research Institute for Dok-do and Ulleung-do Island and Kyungpook Institute of Oceanography, School of Earth System Sciences, Kyungpook National University, Daegu, Korea.

Yana Eglit (Y)

Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada.

Kai Miller (K)

Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada.

Andrey Plotnikov (A)

Center of Shared Scientific Equipment "Persistence of Microorganisms", Institute for Cellular and Intracellular Symbiosis UB RAS, Orenburg, Russia.

Alastair G B Simpson (AGB)

Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada.
Canadian Institute for Advanced Research, Program in Integrated Microbial Diversity, Toronto, Ontario, Canada.

Jong Soo Park (JS)

Department of Oceanography, Research Institute for Dok-do and Ulleung-do Island and Kyungpook Institute of Oceanography, School of Earth System Sciences, Kyungpook National University, Daegu, Korea.

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Classifications MeSH