Engineered ribosomes with tethered subunits for expanding biological function.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
02 09 2019
Historique:
received: 15 11 2018
accepted: 10 07 2019
entrez: 4 9 2019
pubmed: 4 9 2019
medline: 31 12 2019
Statut: epublish

Résumé

Ribo-T is a ribosome with covalently tethered subunits where core 16S and 23S ribosomal RNAs form a single chimeric molecule. Ribo-T makes possible a functionally orthogonal ribosome-mRNA system in cells. Unfortunately, use of Ribo-T has been limited because of low activity of its original version. Here, to overcome this limitation, we use an evolutionary approach to select new tether designs that are capable of supporting faster cell growth and increased protein expression. Further, we evolve new orthogonal Ribo-T/mRNA pairs that function in parallel with, but independent of, natural ribosomes and mRNAs, increasing the efficiency of orthogonal protein expression. The Ribo-T with optimized designs is able to synthesize a diverse set of proteins, and can also incorporate multiple non-canonical amino acids into synthesized polypeptides. The enhanced Ribo-T designs should be useful for exploring poorly understood functions of the ribosome and engineering ribosomes with altered catalytic properties.

Identifiants

pubmed: 31477696
doi: 10.1038/s41467-019-11427-y
pii: 10.1038/s41467-019-11427-y
pmc: PMC6718428
doi:

Substances chimiques

Amino Acids 0
Peptides 0
RNA, Messenger 0
RNA, Ribosomal, 16S 0
RNA, Ribosomal, 23S 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

3920

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Auteurs

Erik D Carlson (ED)

Department of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Chemistry of Life Processes Institute, Northwestern University, 2170 Campus Drive, Evanston, IL, 60208, USA.
Center for Synthetic Biology, Northwestern University, 2145 Sheridan Road, Evanston, IL, 60208, USA.
Department of Chemical Engineering, Stanford University, Stanford, CA, 94305, USA.

Anne E d'Aquino (AE)

Department of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Chemistry of Life Processes Institute, Northwestern University, 2170 Campus Drive, Evanston, IL, 60208, USA.
Center for Synthetic Biology, Northwestern University, 2145 Sheridan Road, Evanston, IL, 60208, USA.
Interdisciplinary Biological Sciences Graduate Program, Northwestern University, Hogan 2-100, 2205 Tech Drive, Evanston, IL, 60208, USA.

Do Soon Kim (DS)

Department of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Chemistry of Life Processes Institute, Northwestern University, 2170 Campus Drive, Evanston, IL, 60208, USA.
Center for Synthetic Biology, Northwestern University, 2145 Sheridan Road, Evanston, IL, 60208, USA.

Emily M Fulk (EM)

Department of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Chemistry of Life Processes Institute, Northwestern University, 2170 Campus Drive, Evanston, IL, 60208, USA.
Center for Synthetic Biology, Northwestern University, 2145 Sheridan Road, Evanston, IL, 60208, USA.

Kim Hoang (K)

Department of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Department of Biology, Johnson and Wales University, Providence, RI, 02903, USA.

Teresa Szal (T)

Center for Pharmaceutical Biotechnology, University of Illinois at Chicago, Chicago, IL, 60607, USA.

Alexander S Mankin (AS)

Center for Pharmaceutical Biotechnology, University of Illinois at Chicago, Chicago, IL, 60607, USA.

Michael C Jewett (MC)

Department of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA. m-jewett@northwestern.edu.
Chemistry of Life Processes Institute, Northwestern University, 2170 Campus Drive, Evanston, IL, 60208, USA. m-jewett@northwestern.edu.
Center for Synthetic Biology, Northwestern University, 2145 Sheridan Road, Evanston, IL, 60208, USA. m-jewett@northwestern.edu.
Interdisciplinary Biological Sciences Graduate Program, Northwestern University, Hogan 2-100, 2205 Tech Drive, Evanston, IL, 60208, USA. m-jewett@northwestern.edu.

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Classifications MeSH