MAS NMR detection of hydrogen bonds for protein secondary structure characterization.


Journal

Journal of biomolecular NMR
ISSN: 1573-5001
Titre abrégé: J Biomol NMR
Pays: Netherlands
ID NLM: 9110829

Informations de publication

Date de publication:
May 2020
Historique:
received: 13 12 2019
accepted: 09 03 2020
pubmed: 19 3 2020
medline: 7 2 2021
entrez: 19 3 2020
Statut: ppublish

Résumé

Hydrogen bonds are essential for protein structure and function, making experimental access to long-range interactions between amide protons and heteroatoms invaluable. Here we show that measuring distance restraints involving backbone hydrogen atoms and carbonyl- or α-carbons enables the identification of secondary structure elements based on hydrogen bonds, provides long-range contacts and validates spectral assignments. To this end, we apply specifically tailored, proton-detected 3D (H)NCOH and (H)NCAH experiments under fast magic angle spinning (MAS) conditions to microcrystalline samples of SH3 and GB1. We observe through-space, semi-quantitative correlations between protein backbone carbon atoms and multiple amide protons, enabling us to determine hydrogen bonding patterns and thus to identify β-sheet topologies and α-helices in proteins. Our approach shows the value of fast MAS and suggests new routes in probing both secondary structure and the role of functionally-relevant protons in all targets of solid-state MAS NMR.

Identifiants

pubmed: 32185644
doi: 10.1007/s10858-020-00307-z
pii: 10.1007/s10858-020-00307-z
pmc: PMC7211791
doi:

Substances chimiques

Amyloid 0
Protons 0
Pancreatic Elastase EC 3.4.21.36

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

247-256

Subventions

Organisme : Deutsche Forschungsgemeinschaft
ID : SFB 1078 B1
Organisme : Deutsche Forschungsgemeinschaft
ID : FR 4220/1-1
Organisme : Human Frontier Science Program
ID : LT000022/2019-L
Organisme : European Molecular Biology Organization
ID : ALTF 35-2019

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Auteurs

Daniel Friedrich (D)

Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Strasse 10, 13125, Berlin, Germany.
Institut für Chemie und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195, Berlin, Germany.
Department of Molecular and Cellular Biology, Harvard University, 52 Oxford Street, Cambridge, MA, 02138, USA.
Department of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, MA, 02215, USA.

Jacqueline Perodeau (J)

Department of Chemistry and Chemical Biology, Rutgers University, 123 Bevier Rd., Piscataway, NJ, 08854, United States.

Andrew J Nieuwkoop (AJ)

Department of Chemistry and Chemical Biology, Rutgers University, 123 Bevier Rd., Piscataway, NJ, 08854, United States. an567@chem.rutgers.edu.

Hartmut Oschkinat (H)

Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Strasse 10, 13125, Berlin, Germany. oschkinat@fmp-berlin.de.
Institut für Chemie und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195, Berlin, Germany. oschkinat@fmp-berlin.de.

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Classifications MeSH