Technical note: developmental validation of a novel 41-plex Y-STR system for the direct amplification of reference samples.
Asian People
/ genetics
Chromosomes, Human, Y
/ genetics
DNA
/ analysis
DNA Fingerprinting
/ methods
Ethnicity
/ genetics
Humans
Male
Microsatellite Repeats
/ genetics
Multiplex Polymerase Chain Reaction
/ instrumentation
Reproducibility of Results
Sensitivity and Specificity
Sequence Analysis, DNA
/ instrumentation
41-plexY-STRsystem
Developmental validation
Forensic genetics
Y-STR
Journal
International journal of legal medicine
ISSN: 1437-1596
Titre abrégé: Int J Legal Med
Pays: Germany
ID NLM: 9101456
Informations de publication
Date de publication:
Mar 2021
Mar 2021
Historique:
received:
12
03
2020
accepted:
28
05
2020
pubmed:
12
6
2020
medline:
10
9
2021
entrez:
12
6
2020
Statut:
ppublish
Résumé
The SureID
Identifiants
pubmed: 32524192
doi: 10.1007/s00414-020-02326-9
pii: 10.1007/s00414-020-02326-9
doi:
Substances chimiques
DNA
9007-49-2
Types de publication
Validation Study
Langues
eng
Sous-ensembles de citation
IM
Pagination
409-419Références
Gopinath S, Zhong C, Nguyen V, Ge J, Lagace RE, Short ML, Mulero JJ (2016) Developmental validation of the Yfiler
Hedman M, Pimenoff V, Lukka M, Sistonen P, Sajantila A (2004) Analysis of 16 Y STR loci in the Finnish population reveals a local reduction in the diversity of male lineages. Forensic Sci Int 142:37–43
doi: 10.1016/j.forsciint.2003.07.003
Hedman M, Neuvonen AM, Sajantila A, Palo JU (2010) Dissecting the Finnish male uniformity: the value of additional Y-STR loci. Forensic Sci Int Genet 5:199–201
doi: 10.1016/j.fsigen.2010.03.007
Kayser M, Vermeulen M, Knoblauch H, Schuster H, Krawczak M, Roewer L (2007) Relating two deep-rooted pedigrees from Central Germany by high-resolution Y-STR haplotyping. Forensic Sci Int Genet 1:125–128
doi: 10.1016/j.fsigen.2007.02.004
Lin H, Ye Q, Tang P, Mo T, Yu X, Tang J (2020) Analyzing genetic polymorphism and mutation of 44 Y-STRs in a Chinese Han population of Southern China. Legal Med 42:101643
doi: 10.1016/j.legalmed.2019.101643
Thompson JM, Ewing MM, Frank WE, Pogemiller JJ, Nolde CA, Koehler DJ, Shaffer AM, Rabbach DR, Fulmer PM, Sprecher CJ, Storts DR (2012) Developmental validation of the PowerPlex
Westen AA, Kraaijenbrink T, Clarisse L, Grol LJW, Willemse P, Zuniga SB, Robles De Medina EA, Schouten R, van der Gaag KJ, Weiler NEC, Kal AJ, Kayser M, Sijen T, de Knijff P (2014) Analysis of 36 Y-STR marker units including a concordance study among 2085 Dutch males. Forensic Sci Int Genet 14:174–181
doi: 10.1016/j.fsigen.2014.10.012
Ballantyne KN, Keerl V, Wollstein A, Choi Y, Zuniga SB, Ralf A, Vermeulen M, de Knijff P, Kayser M (2012) A new future of forensic Y-chromosome analysis: rapidly mutating Y-STRs for differentiating male relatives and paternal lineages. Forensic Sci Int Genet 6:208–218
doi: 10.1016/j.fsigen.2011.04.017
Butler JM, Schoske R (2005) U.S. population data for the multi-copy Y-STR locus DYS464. J Forensic Sci 50:975
pubmed: 16078519
Robino C, Ralf A, Pasino S, De Marchi MR, Ballantyne KN, Barbaro A, Bini C, Carnevali E, Casarino L, Di Gaetano C, Fabbri M, Ferri G, Giardina E, Gonzalez A, Matullo G, Nutini AL, Onofri V, Piccinini A, Piglionica M, Ponzano E, Previderè C, Resta N, Scarnicci F, Seidita G, Sorçaburu-Cigliero S et al (2014) Development of an Italian RM Y-STR haplotype database: results of the 2013 GEFI collaborative exercise. Forensic Sci Int Genet 15:56–63
doi: 10.1016/j.fsigen.2014.10.008
Mo XT, Zhang J, Ma WH, Bai X, Li WS, Zhao XC, Ye J (2019) Developmental validation of the DNATyper
doi: 10.1016/j.fsigen.2018.10.008
Mulero JJ, Chang CW, Calandro LM, Green RL, Li Y, Johnson CL, Hennessy LK (2006) Development and validation of the AmpFlSTR
Shi MS, Tang JP, Bai RF, Yu XJ, Lv JY, Hu B (2007) Haplotypes of 20 Y-chromosomal STRs in a population sample from southeast China (Chaoshan area). Int J Legal Med 121:455–462
doi: 10.1007/s00414-007-0186-2
Dai HL, Wang XD, Li YB, Wu J, Zhang J, Zhang HJ, Dong JG, Hou YP (2004) Characterization and haplotype analysis of 10 novel Y-STR loci in Chinese Han population. Forensic Sci Int 145:47–55
doi: 10.1016/j.forsciint.2004.03.009
Hanson EK, Ballantyne J (2007) Population data for 48 'Non-Core' Y chromosome STR loci. Legal Med 9:221–231
doi: 10.1016/j.legalmed.2006.12.002
Jarve M, Zhivotovsky LA, Rootsi S, Help H, Rogaev EI, Khusnutdinova EK, Kivisild T, Sanchez JJ (2009) Decreased rate of evolution in Y chromosome STR loci of increased size of the repeat unit. PLoS One 4:e7276
doi: 10.1371/journal.pone.0007276
Du W, Feng P, Huang H, Wu W, Zhang L, Guo Y, Liu C, Liu H, Liu C, Chen L (2019) Technical note: developmental validation of a novel 6-dye typing system with 36 Y-STR loci. Int J Legal Med 133:1015–1027
doi: 10.1007/s00414-018-1864-y
Alghafri R, Goodwin W, Ralf A, Kayser M, Hadi S (2015) A novel multiplex assay for simultaneously analysing 13 rapidly mutating Y-STRs. Forensic Sci Int Genet 17:91–98
doi: 10.1016/j.fsigen.2015.04.004
Baeta M, Nunez C, Villaescusa P, Ortueta U, Ibarbia N, Herrera RJ, Blazquez-Caeiro JL, Builes JJ, Jimenez-Moreno S, Martinez-Jarreta B, de Pancorbo MM (2018) Assessment of a subset of Slowly Mutating Y-STRs for forensic and evolutionary studies. Forensic Sci Int Genet 34:e7–e12
doi: 10.1016/j.fsigen.2018.03.008
Ballantyne K, Ralf A, Aboukhalid R, Achakzai N, Anjos T, Ayub Q, Balažic J, Ballantyne J, Ballard D, Berger B, Bobillo C, Bouabdellah M, Burri H, Capal T, Caratti S, Cárdenas J, Cartault F, Carvalho E, Carvalho M, Cheng B, Coble M, Comas D, Corach D, D'Amato M, Davison S et al (2014) Toward male individualization with rapidly mutating Y-chromosomal short tandem repeats. Hum Mutat 35:1021–1032
doi: 10.1002/humu.22599
SWGDAM (2004) Report on the current activities of the Scientific Working Group on DNA Analysis Methods Y-STR Subcommitee. Available at http://www2.fbi.gov/hq/lab/fsc/backissu/july2004/standards/2004_03_standards03.htm . Accessed 10.12.12
SWGDAM (2012) Validation Guidelines for DNA Analysis Methods. Available at http://swgdam.org/SWGDAM_Validation_Guidelines_APPROVED_Dec_2012.pdf . Accessed 04.05.15
SWGDAM (2014) Interpretation Guidelines for Y-Chromosome STR Typing. Available at http://swgdam.org/SWGDAM_YSTR_Guidelines_APPROVED_01092014_v_02112014_FINAL.pdf . Accessed 04.05.15
Nei M, Tajima F (1981) DNA polymorphism detectable by restriction endonucleases. Genetics 97:145–163
pubmed: 6266912
pmcid: 1214380
Hedman J, Nordgaard A, Rasmusson B, Ansell R, Radstrom P (2009) Improved forensic DNA analysis through the use of alternative DNA polymerases and statistical modeling of DNA profiles. Biotechniques 47:951–958
doi: 10.2144/000113246
Opel KL, Chung D, McCord BR (2010) A study of PCR inhibition mechanisms using real time PCR. J Forensic Sci 55:25–33
doi: 10.1111/j.1556-4029.2009.01245.x
Tsai YL, Olson BH (1992) Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl Environ Microbiol 58:2292–2295
doi: 10.1128/AEM.58.7.2292-2295.1992
Akane A, Matsubara K, Nakamura H, Takahashi S, Kimura K (1994) Identification of the heme compound copurified with deoxyribonucleic acid (DNA) from bloodstains, a major inhibitor of polymerase chain reaction (PCR) amplification. J Forensic Sci 39:362
doi: 10.1520/JFS13607J
Shutler GG, Gagnon P, Verret G, Kalyn H, Korkosh S, Johnston E, Halverson J (1999) Removal of a PCR inhibitor and resolution of DNA STR types in mixed human-canine stains from a five year old case. J Forensic Sci 44:623–626
doi: 10.1520/JFS14520J
Schlotterer C, Tautz D (1992) Slippage synthesis of simple sequence DNA. Nucleic Acids Res 20:211–215
doi: 10.1093/nar/20.2.211
Viguera E, Canceill D, Ehrlich SD (2001) In vitro replication slippage by DNA polymerases from thermophilic organisms. J Mol Biol 312:323–333
doi: 10.1006/jmbi.2001.4943
Walsh PS, Fildes NJ, Reynolds R (1996) Sequence analysis and characterization of stutter products at the tetranucleotide repeat locus vWA. Nucleic Acids Res 24:2807–2812
doi: 10.1093/nar/24.14.2807