Genome-Wide Increased Copy Number is Associated with Emergence of Dominant Clones of the Irish Potato Famine Pathogen Phytophthora infestans.

DNA Copy Number Variations Genome Phylogeny Phytophthora infestans / genetics Plant Diseases / parasitology Sequence Alignment Solanum tuberosum / parasitology
Irish famine Phytophthora copy number variation oomycetes plant pathogen plant pathology ploidy population genomics potato late blight

Journal

mBio
ISSN: 2150-7511
Titre abrégé: mBio
Pays: United States
ID NLM: 101519231

Informations de publication

Date de publication:
23 06 2020
Historique:
entrez: 25 6 2020
pubmed: 25 6 2020
medline: 25 3 2021
Statut: epublish

Résumé

The plant pathogen that caused the Irish potato famine,

Identifiants

DOI: 10.1128/mBio.00326-20 PMID: 32576669 PMC: PMC7315116
pubmed: 32576669
pii: mBio.00326-20
doi: 10.1128/mBio.00326-20
pmc: PMC7315116
pii:
doi:

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Références

Phytopathology. 2015 Jul;105(7):966-81
pubmed: 25760519
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Front Genet. 2018 Apr 13;9:123
pubmed: 29706990
Syst Biol. 2012 Jul;61(4):675-89
pubmed: 22357728
Mol Ecol. 2010 May;19(9):1965-77
pubmed: 20345671
Nature. 2009 Sep 17;461(7262):393-8
pubmed: 19741609
Curr Protoc Bioinformatics. 2013;43:11.10.1-11.10.33
pubmed: 25431634
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Cytometry A. 2010 Aug;77(8):769-75
pubmed: 20222066
Mol Ecol Resour. 2017 Jan;17(1):44-53
pubmed: 27401132
PLoS One. 2020 Jan 7;15(1):e0227250
pubmed: 31910244
Fungal Genet Biol. 2008 Mar;45(3):266-77
pubmed: 18039586
Annu Rev Phytopathol. 2005;43:171-90
pubmed: 16078881
Plant Dis. 2013 Mar;97(3):296-306
pubmed: 30722376
PLoS One. 2011;6(9):e24543
pubmed: 21949727
Phytopathology. 2003 Apr;93(4):382-90
pubmed: 18944351
Plant Dis. 2012 Sep;96(9):1323-1330
pubmed: 30727161
BMC Genomics. 2016 May 20;17:385
pubmed: 27206972
Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):8791-6
pubmed: 24889615
Nat Commun. 2013;4:2172
pubmed: 23863894
PLoS One. 2014 Dec 31;9(12):e116354
pubmed: 25551215
Mol Biol Evol. 2016 Feb;33(2):478-91
pubmed: 26576850
Phytopathology. 2012 Apr;102(4):348-64
pubmed: 22185336
Elife. 2013 May 28;2:e00731
pubmed: 23741619
Nat Genet. 2011 May;43(5):491-8
pubmed: 21478889
Science. 2010 Dec 10;330(6010):1540-3
pubmed: 21148391
Phytopathology. 1997 Sep;87(9):973-8
pubmed: 18945070
Annu Rev Phytopathol. 2016 Aug 4;54:529-47
pubmed: 27359366
Fungal Biol. 2011 Apr-May;115(4-5):335-42
pubmed: 21530915
PLoS Pathog. 2012;8(10):e1002940
pubmed: 23055926
Curr Opin Genet Dev. 2015 Dec;35:57-65
pubmed: 26451981
Bioinformatics. 2011 Aug 1;27(15):2156-8
pubmed: 21653522
Nat Rev Microbiol. 2012 May 08;10(6):417-30
pubmed: 22565130
Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11591-5
pubmed: 7972108
Plant Dis. 1997 Dec;81(12):1349-1357
pubmed: 30861785
Mol Plant Microbe Interact. 2017 Jan;30(1):45-52
pubmed: 27957885
Fungal Genet Biol. 2014 May;66:19-32
pubmed: 24603058

Auteurs

Brian J Knaus (BJ)

Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA.
ORCID: 0000-0003-1665-4343

Javier F Tabima (JF)

Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA.
ORCID: 0000-0002-3603-2691

Shankar K Shakya (SK)

Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA.
ORCID: 0000-0002-8439-9009

Howard S Judelson (HS)

Department of Microbiology and Plant Pathology, University of California, Riverside, California, USA.
ORCID: 0000-0001-7865-6235

Niklaus J Grünwald (NJ)

Horticultural Crop Research Unit, United States Department of Agriculture, Agricultural Research Service, Corvallis, Oregon, USA nik.grunwald@ars.usda.gov.
ORCID: 0000-0003-1656-7602

Articles similaires

Comprehensive comparative analysis and development of molecular markers for Lasianthus species based on complete chloroplast genome sequences.

Yue Zhang, Meifang Song, Deying Tang et al.
1.00
Genome, Chloroplast Phylogeny Genetic Markers Base Composition High-Throughput Nucleotide Sequencing

Decoding the genomic terrain: functional insights into 14 chemosensory proteins in whitefly Bemisia tabaci Asia II-1.

M N Rudra Gouda, Sabtharishi Subramanian
1.00
Animals Hemiptera Insect Proteins Phylogeny Insecticides

Multiple NADPH-cytochrome P450 reductases from Lycoris radiata involved in Amaryllidaceae alkaloids biosynthesis.

Yuqing Wu, Yifeng Zhang, Haitong Fan et al.
1.00
Amaryllidaceae Alkaloids Lycoris NADPH-Ferrihemoprotein Reductase Gene Expression Regulation, Plant Plant Proteins

Systematical characterization of Rab7 gene family in Gossypium and potential functions of GhRab7B3-A gene in drought tolerance.

Mengyuan Yan, Zhiwei Dong, Tian Pan et al.
1.00
Drought Resistance Gene Expression Profiling Gene Expression Regulation, Plant Gossypium Multigene Family

Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Polymorphisme génétique › Variation structurale du génome › Variations de nombre de copies de segment d'ADN › Genome-Wide Increased Copy Number is...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Genome-Wide Increased Copy Number is...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Genome-Wide Increased Copy Number is...
questionsmedicales.fr › Eucaryotes › Straménopiles › Oomycetes › Phytophthora › Phytophthora infestans › Genome-Wide Increased Copy Number is...
questionsmedicales.fr › Phénomènes physiologiques des plantes › Maladies des plantes › Genome-Wide Increased Copy Number is...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Alignement de séquences › Genome-Wide Increased Copy Number is...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Solanales › Solanaceae › Solanum › Solanum tuberosum › Genome-Wide Increased Copy Number is...