Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding.


Journal

Heredity
ISSN: 1365-2540
Titre abrégé: Heredity (Edinb)
Pays: England
ID NLM: 0373007

Informations de publication

Date de publication:
12 2020
Historique:
received: 27 01 2020
accepted: 16 06 2020
revised: 16 06 2020
pubmed: 4 7 2020
medline: 27 8 2021
entrez: 4 7 2020
Statut: ppublish

Résumé

Crop populations derived from experimental crosses enable the genetic dissection of complex traits and support modern plant breeding. Among these, multi-parent populations now play a central role. By mixing and recombining the genomes of multiple founders, multi-parent populations combine many commonly sought beneficial properties of genetic mapping populations. For example, they have high power and resolution for mapping quantitative trait loci, high genetic diversity and minimal population structure. Many multi-parent populations have been constructed in crop species, and their inbred germplasm and associated phenotypic and genotypic data serve as enduring resources. Their utility has grown from being a tool for mapping quantitative trait loci to a means of providing germplasm for breeding programmes. Genomics approaches, including de novo genome assemblies and gene annotations for the population founders, have allowed the imputation of rich sequence information into the descendent population, expanding the breadth of research and breeding applications of multi-parent populations. Here, we report recent successes from crop multi-parent populations in crops. We also propose an ideal genotypic, phenotypic and germplasm 'package' that multi-parent populations should feature to optimise their use as powerful community resources for crop research, development and breeding.

Identifiants

pubmed: 32616877
doi: 10.1038/s41437-020-0336-6
pii: 10.1038/s41437-020-0336-6
pmc: PMC7784848
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

396-416

Subventions

Organisme : Medical Research Council
ID : MR/S031677/1
Pays : United Kingdom

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Auteurs

Michael F Scott (MF)

UCL Genetics Institute, Gower Street, London, WC1E 6BT, UK. m.f.scott@ucl.ac.uk.

Olufunmilayo Ladejobi (O)

UCL Genetics Institute, Gower Street, London, WC1E 6BT, UK. f.ladejobi@ucl.ac.uk.

Samer Amer (S)

University of Reading, Reading, RG6 6AH, UK.
Faculty of Agriculture, Alexandria University, Alexandria, 23714, Egypt.

Alison R Bentley (AR)

The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.

Jay Biernaskie (J)

Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, UK.

Scott A Boden (SA)

School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia.

Matt Clark (M)

Natural History Museum, London, UK.

Matteo Dell'Acqua (M)

Institute of Life Sciences, Scuola Superiore Sant'Anna, Pisa, Italy.

Laura E Dixon (LE)

Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK.

Carla V Filippi (CV)

Instituto de Agrobiotecnología y Biología Molecular (IABIMO), INTA-CONICET, Nicolas Repetto y Los Reseros s/n, 1686, Hurlingham, Buenos Aires, Argentina.

Nick Fradgley (N)

The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.

Keith A Gardner (KA)

The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.

Ian J Mackay (IJ)

SRUC, West Mains Road, Kings Buildings, Edinburgh, EH9 3JG, UK.

Donal O'Sullivan (D)

University of Reading, Reading, RG6 6AH, UK.

Lawrence Percival-Alwyn (L)

The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.

Manish Roorkiwal (M)

Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.

Rakesh Kumar Singh (RK)

International Center for Biosaline Agriculture, Academic City, Dubai, United Arab Emirates.

Mahendar Thudi (M)

Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.

Rajeev Kumar Varshney (RK)

Center of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.

Luca Venturini (L)

Natural History Museum, London, UK.

Alex Whan (A)

CSIRO, GPO Box 1700, Canberra, ACT, 2601, Australia.

James Cockram (J)

The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.

Richard Mott (R)

UCL Genetics Institute, Gower Street, London, WC1E 6BT, UK.

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Classifications MeSH