Chromosome-Scale Assembly of the Bread Wheat Genome Reveals Thousands of Additional Gene Copies.

Chromosomes, Plant / genetics Contig Mapping / methods Gene Dosage Genome, Plant Genomics / methods Reference Standards Triticum / genetics
gene annotation gene duplication genome assembly scaffolding wheat

Journal

Genetics
ISSN: 1943-2631
Titre abrégé: Genetics
Pays: United States
ID NLM: 0374636

Informations de publication

Date de publication:
10 2020
Historique:
received: 04 07 2020
accepted: 10 08 2020
pubmed: 17 8 2020
medline: 15 7 2021
entrez: 16 8 2020
Statut: ppublish

Résumé

Bread wheat (

Identifiants

DOI: 10.1534/genetics.120.303501 PMID: 32796007 PMC: PMC7536849
pubmed: 32796007
pii: genetics.120.303501
doi: 10.1534/genetics.120.303501
pmc: PMC7536849
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

599-608

Subventions

Organisme : NHGRI NIH HHS
ID : R01 HG006677
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM130151
Pays : United States

Informations de copyright

Copyright © 2020 by the Genetics Society of America.

Références

Genome Res. 2017 May;27(5):885-896
pubmed: 28420692
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
PLoS One. 2012;7(3):e33234
pubmed: 22457747
Genome Biol. 2004;5(2):R12
pubmed: 14759262
Nat Plants. 2020 Jan;6(1):34-45
pubmed: 31932676
Science. 2014 Jul 18;345(6194):1251788
pubmed: 25035500
Bioinformatics. 2017 Sep 1;33(17):2759-2761
pubmed: 28472236
BMC Genet. 2015 Jul 29;16:96
pubmed: 26219856
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Nat Rev Genet. 2001 Mar;2(3):186-95
pubmed: 11256070
Bioinformatics. 2015 May 15;31(10):1674-6
pubmed: 25609793
Mol Phylogenet Evol. 2006 Apr;39(1):70-82
pubmed: 16504543
Cell. 2020 Jul 9;182(1):145-161.e23
pubmed: 32553272
Genome Biol. 2015 Jan 31;16:26
pubmed: 25637298
Plant J. 2017 Feb;89(4):764-773
pubmed: 27859852
Genome Res. 2010 Sep;20(9):1165-73
pubmed: 20508146
Science. 2018 Aug 17;361(6403):
pubmed: 30115783
F1000Res. 2020 Apr 28;9:304
pubmed: 32489650
PLoS Comput Biol. 2018 Jan 26;14(1):e1005944
pubmed: 29373581
Plant Cell Environ. 2018 Jun;41(6):1407-1416
pubmed: 29480543
Gigascience. 2017 Nov 1;6(11):1-7
pubmed: 29069494
Nature. 1991 Sep 5;353(6339):31-7
pubmed: 1715520
Science. 2007 Jun 29;316(5833):1862-6
pubmed: 17600208
PLoS Comput Biol. 2020 Jun 26;16(6):e1007981
pubmed: 32589667
Cell. 2020 Jul 9;182(1):162-176.e13
pubmed: 32553274
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Genome Biol. 2019 Oct 28;20(1):224
pubmed: 31661016
Bioinformatics. 2018 Sep 15;34(18):3094-3100
pubmed: 29750242
Theor Appl Genet. 2007 Sep;115(5):721-33
pubmed: 17634915
Nat Plants. 2019 May;5(5):471-479
pubmed: 31061537
PLoS Genet. 2016 Apr 25;12(4):e1005997
pubmed: 27110907
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712

Auteurs

Michael Alonge (M)

Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218 malonge11@gmail.com salzberg@jhu.edu.
ORCID: 0000-0002-3692-1819

Alaina Shumate (A)

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218.
Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland 21211.
ORCID: 0000-0002-4450-1857

Daniela Puiu (D)

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218.
Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland 21211.
ORCID: 0000-0002-2386-9265

Aleksey V Zimin (AV)

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218.
Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland 21211.
ORCID: 0000-0001-5091-3092

Steven L Salzberg (SL)

Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218 malonge11@gmail.com salzberg@jhu.edu.
Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218.
Center for Computational Biology, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland 21211.
Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205.
ORCID: 0000-0002-8859-7432

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Chromosomes › Chromosomes de plante › Chromosome-Scale Assembly of the Bread Wheat...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Cartographie de contigs › Chromosome-Scale Assembly of the Bread Wheat...
questionsmedicales.fr › Phénomènes génétiques › Génotype › Dosage génique › Chromosome-Scale Assembly of the Bread Wheat...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome végétal › Chromosome-Scale Assembly of the Bread Wheat...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Chromosome-Scale Assembly of the Bread Wheat...
questionsmedicales.fr › Techniques d'investigation › Poids et mesures › Normes de référence › Chromosome-Scale Assembly of the Bread Wheat...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Poaceae › Triticum › Chromosome-Scale Assembly of the Bread Wheat...