Femtoplankton: What's New?

aster-like nanoparticles biomimetic mineral–organic particles extracellular vesicles femtoplankton gene transfer agents ultra-small prokaryotes viruses

Journal

Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722

Informations de publication

Date de publication:
12 08 2020
Historique:
received: 18 06 2020
revised: 10 08 2020
accepted: 10 08 2020
entrez: 19 8 2020
pubmed: 19 8 2020
medline: 25 2 2021
Statut: epublish

Résumé

Since the discovery of high abundances of virus-like particles in aquatic environment, emergence of new analytical methods in microscopy and molecular biology has allowed significant advances in the characterization of the femtoplankton, i.e., floating entities filterable on a 0.2 µm pore size filter. The successive evidences in the last decade (2010-2020) of high abundances of biomimetic mineral-organic particles, extracellular vesicles, CPR/DPANN (Candidate phyla radiation/Diapherotrites, Parvarchaeota, Aenigmarchaeota, Nanoarchaeota and Nanohaloarchaeota), and very recently of aster-like nanoparticles (ALNs), show that aquatic ecosystems form a huge reservoir of unidentified and overlooked femtoplankton entities. The purpose of this review is to highlight this unsuspected diversity. Herein, we focus on the origin, composition and the ecological potentials of organic femtoplankton entities. Particular emphasis is given to the most recently discovered ALNs. All the entities described are displayed in an evolutionary context along a continuum of complexity, from minerals to cell-like living entities.

Identifiants

pubmed: 32806713
pii: v12080881
doi: 10.3390/v12080881
pmc: PMC7472349
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Références

Proc Natl Acad Sci U S A. 2014 May 27;111(21):7813-8
pubmed: 24825894
Science. 2014 Jan 10;343(6167):183-6
pubmed: 24408433
J Bacteriol. 1997 Jan;179(2):323-9
pubmed: 8990282
Extremophiles. 2009 Jan;13(1):67-79
pubmed: 18972064
Cold Spring Harb Perspect Biol. 2010 Jul;2(7):a002170
pubmed: 20519344
Trends Microbiol. 2013 Jan;21(1):1-5
pubmed: 23140888
Nat Rev Drug Discov. 2013 May;12(5):347-57
pubmed: 23584393
Life (Basel). 2016 Jan 26;6(1):
pubmed: 26821048
Nat Rev Microbiol. 2012 Jun 11;10(7):472-82
pubmed: 22683880
Int Microbiol. 2005 Mar;8(1):23-31
pubmed: 15906258
Environ Microbiol Rep. 2013 Feb;5(1):109-16
pubmed: 23757139
Pharmacol Ther. 2018 Aug;188:1-11
pubmed: 29476772
Science. 1996 Nov 22;274(5291):1288
pubmed: 8966594
Curr Opin Microbiol. 2017 Aug;38:122-129
pubmed: 28599143
Sci Rep. 2011;1:135
pubmed: 22355652
Beilstein J Org Chem. 2017 Jul 13;13:1388-1395
pubmed: 28781704
Proc Natl Acad Sci U S A. 2003 Jun 24;100(13):7438-42
pubmed: 12792020
ISME J. 2012 Jan;6(1):81-93
pubmed: 21716304
Science. 1996 Aug 16;273(5277):924-30
pubmed: 8688069
Genome. 2013 Oct;56(10):542-4
pubmed: 24237332
Front Microbiol. 2014 Jul 24;5:355
pubmed: 25104950
Viruses. 2017 Oct 18;9(10):
pubmed: 29057790
Curr Opin Microbiol. 2016 Aug;32:77-81
pubmed: 27232382
FEMS Microbiol Lett. 1995 Dec 1;134(1):97-101
pubmed: 8593962
Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):E2401-E2410
pubmed: 28265094
J Bacteriol. 2000 May;182(10):2985-8
pubmed: 10781574
Life (Basel). 2020 Feb 26;10(3):
pubmed: 32110893
Mass Spectrom Rev. 2015 Jul-Aug;34(4):474-90
pubmed: 24421117
J Lipid Res. 2018 Aug;59(8):1316-1324
pubmed: 29764923
ISME J. 2009 Feb;3(2):159-67
pubmed: 18946497
Cell. 2008 Oct 3;135(1):23-35
pubmed: 18854152
FEMS Microbiol Lett. 2019 Jan 1;366(2):
pubmed: 30629179
Microbiol Mol Biol Rev. 2000 Mar;64(1):69-114
pubmed: 10704475
J Extracell Vesicles. 2016 Sep 22;5:31427
pubmed: 27664155
Biol Direct. 2006 Sep 19;1:29
pubmed: 16984643
Ecotoxicology. 2008 Jul;17(5):326-43
pubmed: 18459043
ISME J. 2017 Feb;11(2):394-404
pubmed: 27824343
Anal Biochem. 2011 Nov 1;418(1):111-25
pubmed: 21741946
Cell. 1983 Jul;33(3):967-78
pubmed: 6307529
Elife. 2018 Apr 19;7:
pubmed: 29624169
Front Microbiol. 2016 Feb 25;7:211
pubmed: 26941731
Nat Rev Microbiol. 2005 Jun;3(6):504-10
pubmed: 15886693
Prion. 2009 Jul-Sep;3(3):171-83
pubmed: 19823039
Anaerobe. 2007 Apr;13(2):43-9
pubmed: 17513139
Bioessays. 2017 Aug;39(8):
pubmed: 28621804
Microb Ecol. 1994 Sep;28(2):237-43
pubmed: 24186450
Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):11013-8
pubmed: 15256601
J Gen Virol. 1991 Sep;72 ( Pt 9):2197-206
pubmed: 1895057
Can J Microbiol. 2009 Feb;55(2):95-109
pubmed: 19295641
Adv Virus Res. 2018;101:1-38
pubmed: 29908587
Science. 1996 May 24;272(5265):1153-5
pubmed: 8662449
Res Microbiol. 2013 Jun;164(5):397-405
pubmed: 23517882
Nat Commun. 2019 Feb 5;10(1):595
pubmed: 30723210
Curr Biol. 2015 Mar 16;25(6):690-701
pubmed: 25702576
J Bacteriol. 2005 Sep;187(17):5885-92
pubmed: 16109929
Front Genet. 2019 Feb 12;10:65
pubmed: 30809245
Microb Ecol. 2020 Nov;80(4):741-745
pubmed: 32556417
Viruses. 2019 Apr 30;11(5):
pubmed: 31052218
Adv Drug Deliv Rev. 2020;159:308-321
pubmed: 32151658
Sci Rep. 2017 Jan 04;7:39642
pubmed: 28051127
ISME J. 2016 Nov;10(11):2702-2714
pubmed: 27137126
F1000 Biol Rep. 2012;4:17
pubmed: 22991582
Nucleic Acids Res. 2009 Mar;37(4):1011-34
pubmed: 19213802
Annu Rev Virol. 2017 Sep 29;4(1):87-104
pubmed: 28784044
Nature. 2013 Jul 25;499(7459):431-7
pubmed: 23851394
Science. 2004 Nov 19;306(5700):1344-50
pubmed: 15486256
FEMS Microbiol Rev. 2004 May;28(2):127-81
pubmed: 15109783
Nat Microbiol. 2017 Nov;2(11):1533-1542
pubmed: 28894102
Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):6854-9
pubmed: 9618502
Nat Commun. 2017 Jul 05;8:15955
pubmed: 28677677
Proc Natl Acad Sci U S A. 2010 May 11;107(19):8806-11
pubmed: 20421484
Front Cell Infect Microbiol. 2019 Mar 04;9:42
pubmed: 30886834
Appl Environ Microbiol. 2008 May;74(10):2933-9
pubmed: 18359833
Nat Rev Microbiol. 2020 Jan;18(1):21-34
pubmed: 31690825
J Cell Biol. 2013 Feb 18;200(4):373-83
pubmed: 23420871
Nat Commun. 2015 Feb 27;6:6372
pubmed: 25721682
Cells. 2019 Jul 15;8(7):
pubmed: 31311206
Cell Res. 2014 Jun;24(6):766-9
pubmed: 24710597
Artif Life. 2003 Summer;9(3):269-316
pubmed: 14556688
Nat Microbiol. 2016 Jan 25;1:15024
pubmed: 27572161
ISME J. 2013 Mar;7(3):672-9
pubmed: 23151645
Am J Vet Res. 2003 Feb;64(2):176-82
pubmed: 12602586
Clin Ther. 2014 Jun 1;36(6):817-8
pubmed: 24952933
Curr Opin Microbiol. 2017 Aug;38:16-21
pubmed: 28441577
Biochim Biophys Acta. 2013 Jul;1831(7):1302-9
pubmed: 24046871
Appl Environ Microbiol. 2014 Aug;80(15):4470-80
pubmed: 24837394
Nature. 2002 Dec 19-26;420(6917):806-10
pubmed: 12490947
J Mol Biol. 1979 Jun 25;131(2):157-68
pubmed: 490646
Nature. 2009 May 14;459(7244):207-12
pubmed: 19444207
Biochimie. 2007 Feb;89(2):205-12
pubmed: 17157973
Genome Biol Evol. 2018 Jan 1;10(1):359-369
pubmed: 29325123
Bacteriol Rev. 1971 Sep;35(3):235-41
pubmed: 4329869
Bioessays. 2017 Dec;39(12):
pubmed: 28983932
Nat Rev Microbiol. 2018 Oct;16(10):629-645
pubmed: 30181663
J Cell Biol. 1983 Aug;97(2):329-39
pubmed: 6309857
Curr Opin Microbiol. 2018 Jun;43:148-154
pubmed: 29448174
Front Microbiol. 2018 Oct 25;9:2527
pubmed: 30410473
Nat Commun. 2016 Oct 24;7:13219
pubmed: 27774985
Mol Microbiol. 2012 Jul;85(2):314-25
pubmed: 22640804
Cell. 2003 Apr 18;113(2):141
pubmed: 12705861
Front Microbiol. 2018 Aug 21;9:1971
pubmed: 30186275
Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5549-54
pubmed: 18385376
Environ Microbiol Rep. 2014 Aug;6(4):325-30
pubmed: 24992530
Annu Rev Genet. 2009;43:49-66
pubmed: 19653859
Biochim Biophys Acta. 2014 Jan;1841(1):108-20
pubmed: 24140720
Nature. 1999 Jun 10;399(6736):541-8
pubmed: 10376593
Life (Basel). 2019 Mar 01;9(1):
pubmed: 30832272
IUBMB Life. 2000 Mar;49(3):173-6
pubmed: 10868906
Nat Cell Biol. 2007 Jun;9(6):654-9
pubmed: 17486113
Nature. 2019 Feb;566(7744):318-320
pubmed: 30787460
PLoS One. 2015 Jan 12;10(1):e0116896
pubmed: 25581302
Nature. 2016 Aug 25;536(7617):425-30
pubmed: 27533034
PLoS Genet. 2009 Jul;5(7):e1000546
pubmed: 19578403
J Theor Biol. 2019 Mar 7;464:126-131
pubmed: 30599164
Science. 2004 Mar 12;303(5664):1626-32
pubmed: 15016989
Nat Microbiol. 2017 Nov;2(11):1485-1492
pubmed: 28924189
Genome Biol Evol. 2019 Apr 1;11(4):1166-1177
pubmed: 30903144
J Virol. 2014 Jun;88(11):6403-10
pubmed: 24672040
Trends Microbiol. 2007 Feb;15(2):54-62
pubmed: 17184993
J Mol Biol. 1968 Dec;38(3):381-93
pubmed: 5718557
Exp Cell Res. 2013 Aug 1;319(13):2006-2018
pubmed: 23732660
Virus Res. 2006 Apr;117(1):5-16
pubmed: 16476498
Cell. 2019 May 16;177(5):1109-1123.e14
pubmed: 31031001
J Cell Sci. 2010 May 15;123(Pt 10):1603-11
pubmed: 20445011
J Theor Biol. 2019 Jan 7;460:142-143
pubmed: 30312689
FEMS Microbiol Rev. 2019 May 1;43(3):273-303
pubmed: 30476045
Nat Microbiol. 2017 Oct;2(10):1446-1455
pubmed: 28827601
J Extracell Vesicles. 2015 May 14;4:27066
pubmed: 25979354
FEMS Microbiol Lett. 2018 Oct 1;365(19):
pubmed: 30085064
Exp Cell Res. 2010 Jul 15;316(12):1977-84
pubmed: 20399774
Sci Rep. 2016 Jun 28;6:28817
pubmed: 27350595
ISME J. 2015 Mar 17;9(4):793-6
pubmed: 25314322
Curr Med Chem. 2017 Nov 24;24(36):3987-4001
pubmed: 28412903
ISME J. 2013 Feb;7(2):233-6
pubmed: 23038175
Nat Commun. 2011 Feb 01;2:180
pubmed: 21285958
Nat Rev Immunol. 2009 Aug;9(8):581-93
pubmed: 19498381
Res Microbiol. 2008 Jun;159(5):390-9
pubmed: 18625304
Cell Microbiol. 2016 Nov;18(11):1525-1536
pubmed: 27673272
J Gen Virol. 1999 Dec;80 ( Pt 12):3305-3308
pubmed: 10567664
Biochimie. 2015 Nov;118:356-64
pubmed: 26234734
ISME J. 2018 Apr;12(4):1154-1162
pubmed: 29379178
Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12127-32
pubmed: 25092302
Cell Microbiol. 2019 Nov;21(11):e13068
pubmed: 31231937
Ann Rev Mar Sci. 2014;6:393-414
pubmed: 23987913
Adv Cancer Res. 2014;123:121-48
pubmed: 25081528
Nat Rev Microbiol. 2014 Jul;12(7):519-28
pubmed: 24931044
HFSP J. 2007 Sep;1(3):156-68
pubmed: 19404443
Microbiol Mol Biol Rev. 2010 Mar;74(1):42-57
pubmed: 20197498
Appl Environ Microbiol. 2004 Oct;70(10):5842-6
pubmed: 15466522
Nat Microbiol. 2016 Apr 11;1:16048
pubmed: 27572647
Nature. 2015 Jul 9;523(7559):208-11
pubmed: 26083755
Nature. 2002 Aug 8;418(6898):630-3
pubmed: 12167859
Nature. 2020 Feb;578(7795):425-431
pubmed: 32051592
Curr Opin Cell Biol. 2009 Aug;21(4):575-81
pubmed: 19442504
J Extracell Vesicles. 2013 Feb 15;2:
pubmed: 24009890
Nat Rev Microbiol. 2007 Oct;5(10):801-12
pubmed: 17853907
Proc Natl Acad Sci U S A. 1998 Jul 7;95(14):8274-9
pubmed: 9653177
Cell. 2018 Mar 8;172(6):1181-1197
pubmed: 29522741
Astrobiology. 2018 Mar;18(3):259-293
pubmed: 29489386
PLoS One. 2012;7(8):e43772
pubmed: 22916305
Genome Biol. 2006;7(6):110
pubmed: 16787527
Virus Evol. 2019 Apr 22;5(1):vez006
pubmed: 31024737
J Clin Microbiol. 2001 Mar;39(3):879-82
pubmed: 11230398
Semin Cancer Biol. 2014 Oct;28:3-13
pubmed: 24769058
Proc Natl Acad Sci U S A. 1987 Dec;84(24):9128-30
pubmed: 16578824
Nat Microbiol. 2017 Oct;2(10):1340-1341
pubmed: 29046528
Nature. 2005 Sep 15;437(7057):356-61
pubmed: 16163346
J Bacteriol. 1999 May;181(10):2992-3002
pubmed: 10321998
Mikrobiologiia. 2012 Jul-Aug;81(4):415-27
pubmed: 23156684
Viruses. 2019 Jan 24;11(2):
pubmed: 30678352
Viruses. 2019 Oct 29;11(11):
pubmed: 31671744
Proc Natl Acad Sci U S A. 1974 Mar;71(3):971-3
pubmed: 4522805
Biochem Biophys Rep. 2015 Nov 04;4:369-374
pubmed: 29124226
Philos Trans R Soc Lond B Biol Sci. 2017 Dec 5;372(1735):
pubmed: 29061896
Microbiology (Reading). 2000 Mar;146 ( Pt 3):599-609
pubmed: 10746763
mSystems. 2017 Feb 14;2(1):
pubmed: 28217745
J Mol Microbiol Biotechnol. 1999 Aug;1(1):45-50
pubmed: 10941783
PLoS Pathog. 2008 Feb 8;4(2):e41
pubmed: 18282102
Virology. 2015 May;479-480:2-25
pubmed: 25771806
Front Microbiol. 2019 Oct 15;10:2376
pubmed: 31681233
Appl Environ Microbiol. 2014 Feb;80(4):1455-62
pubmed: 24334672
Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4274-9
pubmed: 24591590
Science. 2010 Oct 1;330(6000):50
pubmed: 20929803
Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12984-8
pubmed: 14566062
Microbiome. 2019 Dec 10;7(1):157
pubmed: 31823797
Nat Rev Microbiol. 2017 Mar;15(3):161-168
pubmed: 28134265
mBio. 2013 Oct 22;4(5):e00708-13
pubmed: 24149512
Science. 2013 Jul 19;341(6143):281-6
pubmed: 23869018
Proc Natl Acad Sci U S A. 2000 Oct 10;97(21):11511-5
pubmed: 11027350
Nat Commun. 2019 Sep 13;10(1):4173
pubmed: 31519891
PLoS One. 2015 May 08;10(5):e0126094
pubmed: 25955384
Nature. 2002 May 2;417(6884):63-7
pubmed: 11986665

Auteurs

Jonathan Colombet (J)

Laboratoire Microorganismes: Génome et Environnement (LMGE), UMR CNRS 6023, Université Clermont Auvergne, F-63000 Clermont-Ferrand, France.

Maxime Fuster (M)

Laboratoire Microorganismes: Génome et Environnement (LMGE), UMR CNRS 6023, Université Clermont Auvergne, F-63000 Clermont-Ferrand, France.

Hermine Billard (H)

Laboratoire Microorganismes: Génome et Environnement (LMGE), UMR CNRS 6023, Université Clermont Auvergne, F-63000 Clermont-Ferrand, France.

Télesphore Sime-Ngando (T)

Laboratoire Microorganismes: Génome et Environnement (LMGE), UMR CNRS 6023, Université Clermont Auvergne, F-63000 Clermont-Ferrand, France.

Articles similaires

Genome, Chloroplast Phylogeny Genetic Markers Base Composition High-Throughput Nucleotide Sequencing
Animals Hemiptera Insect Proteins Phylogeny Insecticides
Amaryllidaceae Alkaloids Lycoris NADPH-Ferrihemoprotein Reductase Gene Expression Regulation, Plant Plant Proteins
Drought Resistance Gene Expression Profiling Gene Expression Regulation, Plant Gossypium Multigene Family

Classifications MeSH