Repeated intercontinental migrations and recurring hybridizations characterise the evolutionary history of yew (Taxus L.).

Ancestral area estimation Biogeographic origin Evolutionary history Hybridization Phylogenetic relationships Vicariance

Journal

Molecular phylogenetics and evolution
ISSN: 1095-9513
Titre abrégé: Mol Phylogenet Evol
Pays: United States
ID NLM: 9304400

Informations de publication

Date de publication:
12 2020
Historique:
received: 14 07 2019
revised: 19 07 2020
accepted: 28 08 2020
pubmed: 6 9 2020
medline: 14 1 2021
entrez: 5 9 2020
Statut: ppublish

Résumé

The genus Taxus (Taxaceae) consists of 16 genetically well-defined lineages that are predominantly distributed across the Northern hemisphere. We investigated its biogeographic origin and evolutionary history by sampling 13 chloroplast gene sequences, the nuclear internal transcribed spacers (ITS) and NEEDLY sequences for all 16 lineages. We applied Maximum Parsimony and Bayesian Inference analyses to infer their phylogenetic relationships, time-calibrated phylogenies using BEAST and inferred the ancestral area of occupancy with BioGeoBEARS. We found strong evidence for the hybrid origin of three lineages and dated these events to a rather narrow time window of 6.8-4.9 million years ago (Mya). The dated phylogenies inferred an Upper Cretaceous origin of the genus, with the extant lineages diversifying in North America much later during the Oligocene/early Miocene. Repeated migrations via the Bering land bridge to Eurasia and back were further inferred, with the return to North America as a possible result of vicariance. The diversification in Eurasia (from ~8 Mya onwards) coincided with the orogeny of the Hengduan Mountains, the intensification of the East Asian summer monsoon and the occupancy of ecological niches by lineages that experienced secondary contacts and hybridizations in the Hengduan Mountains and Qinling Mountain, especially around the Sichuan basin. We provide a hypothesis for the evolution of extant lineages of Taxus, a genus with an old and complex evolutionary history. The study highlights that the history of complex species can be unravelled with a careful dissection of phylogenetic signals.

Identifiants

pubmed: 32889136
pii: S1055-7903(20)30224-4
doi: 10.1016/j.ympev.2020.106952
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

106952

Informations de copyright

Copyright © 2020 Elsevier Inc. All rights reserved.

Auteurs

Michael Möller (M)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China; Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, United Kingdom. Electronic address: m.moeller@rbge.org.uk.

Jie Liu (J)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China; Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China.

Yan Li (Y)

Institute of Alpine Economic Plants, Yunnan Academy of Agricultural Sciences, Lijiang, Yunnan 674100, China.

Jian-Hua Li (JH)

Biology Department, Hope College, Holland, MI 49423, USA.

Lin-Jiang Ye (LJ)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China; Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China; Kunming College of Life Sciences, University of Chinese Academy of Sciences, Kunming, Yunnan 650201, China.

Robert Mill (R)

Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, United Kingdom.

Philip Thomas (P)

Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, United Kingdom.

De-Zhu Li (DZ)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China; Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China; Kunming College of Life Sciences, University of Chinese Academy of Sciences, Kunming, Yunnan 650201, China. Electronic address: dzl@mail.kib.ac.cn.

Lian-Ming Gao (LM)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China. Electronic address: gaolm@mail.kib.ac.cn.

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Classifications MeSH