[Construction and verification of Lactococcus lactis NZ9000 genome-scale metabolic model].


Journal

Sheng wu gong cheng xue bao = Chinese journal of biotechnology
ISSN: 1872-2075
Titre abrégé: Sheng Wu Gong Cheng Xue Bao
Pays: China
ID NLM: 9426463

Informations de publication

Date de publication:
25 Aug 2020
Historique:
entrez: 14 9 2020
pubmed: 15 9 2020
medline: 23 10 2020
Statut: ppublish

Résumé

With the advent of the post-genomic era, metabolic engineering of microorganisms plays an increasingly important role in industrial production. The genome-scale metabolic model (GSMM) integrates all known metabolic information in the organism to provide an optimal platform for global understanding of the metabolic state of the organism and rational guidance for metabolic engineering. As a model strain, Lactococcus lactis NZ9000 plays an important role in industrial fermentation, but there is still no specific genome-scale metabolic model for it. Based on genomic function annotation and comparative genomics, we constructed the first genome-scale metabolic model iWK557 of L. lactis NZ9000, which contains 557 genes, 668 metabolites, and 840 reactions, and further verified at both qualitative and quantitative levels, to provide a good tool for rationally guiding metabolic engineering. 随着后基因组时代的到来,工业微生物的代谢工程改造在工业生产上发挥着越来越重要的作用。而基因组规模代谢网络模型 (Genome-scale metabolic model,GSMM) 将生物体体内所有已知代谢信息进行整合,为全局理解生物体的代谢状态、理性指导代谢工程改造提供了最佳的平台。乳酸乳球菌NZ9000 (Lactococcus lactis NZ9000) 作为工业发酵领域的重要菌株之一,由于其遗传背景清晰且几乎不分泌蛋白,是基因工程改造和外源蛋白表达的理想模式菌株。文中基于基因组功能注释和比较基因组学构建了L. lactis NZ9000 的首个基因组规模代谢网络模型iWK557,包含557 个基因、668 个代谢物、840 个反应,并进一步在定性和定量两个层次验证了iWK557的准确性,以期为理性指导L. lactis NZ9000 代谢工程改造提供良好工具。.

Autres résumés

Type: Publisher (chi)
随着后基因组时代的到来,工业微生物的代谢工程改造在工业生产上发挥着越来越重要的作用。而基因组规模代谢网络模型 (Genome-scale metabolic model,GSMM) 将生物体体内所有已知代谢信息进行整合,为全局理解生物体的代谢状态、理性指导代谢工程改造提供了最佳的平台。乳酸乳球菌NZ9000 (Lactococcus lactis NZ9000) 作为工业发酵领域的重要菌株之一,由于其遗传背景清晰且几乎不分泌蛋白,是基因工程改造和外源蛋白表达的理想模式菌株。文中基于基因组功能注释和比较基因组学构建了L. lactis NZ9000 的首个基因组规模代谢网络模型iWK557,包含557 个基因、668 个代谢物、840 个反应,并进一步在定性和定量两个层次验证了iWK557的准确性,以期为理性指导L. lactis NZ9000 代谢工程改造提供良好工具。.

Identifiants

pubmed: 32924361
doi: 10.13345/j.cjb.190552
doi:

Types de publication

Journal Article

Langues

chi

Sous-ensembles de citation

IM

Pagination

1629-1639

Auteurs

Weikang Sun (W)

Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, Jiangsu, China.
School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China.

Juan Zhang (J)

Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, Jiangsu, China.
School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China.

Guocheng Du (G)

School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China.
Synergetic Innovation Center, Jiangnan University, Wuxi 214122, Jiangsu, China.

Articles similaires

Coal Metagenome Phylogeny Bacteria Genome, Bacterial
Genome, Bacterial Virulence Phylogeny Genomics Plant Diseases
Vibrio Whole Genome Sequencing Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization Genome, Bacterial Water Microbiology
Saccharomyces cerevisiae Aldehydes Biotransformation Flavoring Agents Lipoxygenase

Classifications MeSH