New contributions to two ciliate genera (Ciliophora, Heterotrichea) based on morphological and molecular analyses, with description of a new Gruberia species.


Journal

BMC microbiology
ISSN: 1471-2180
Titre abrégé: BMC Microbiol
Pays: England
ID NLM: 100966981

Informations de publication

Date de publication:
02 10 2020
Historique:
received: 28 01 2020
accepted: 25 06 2020
entrez: 3 10 2020
pubmed: 4 10 2020
medline: 8 9 2021
Statut: epublish

Résumé

Heterotrichous ciliates are common members of microeukaryote communities which play important roles in both the transfer of material and the flow of energy in aquatic food webs. This group has been known for over two centuries due to their large body size and cosmopolitan distribution. Nevertheless, species identification and phylogenetic relationships of heterotrichs remain challenging due to the lack of accurate morphological information and insufficient molecular data. The morphology and phylogeny of two heterotrichous ciliates, namely Gruberia foissneri spec. nov. and Linostomella vorticella (Ehrenberg, 1833) Aescht in Foissner et al., 1999, were studied using rigorous methods (living morphology, stained preparations, and small subunit rDNA sequence data). Gruberia foissneri spec. nov. is morphologically very similar to G. uninucleata Kahl, 1932, however, it can be distinguished from the latter by having more ciliary rows (about 32 vs. about 20) and macronuclear shape (sausage-shaped vs. ellipsoid). Based on a combination of previous and present studies, an improved diagnosis of L. vorticella is supplied and several taxonomic anomalies are clarified. In addition, phylogenetic analyses based on SSU rDNA sequence data support the generic assignment of these two species. Modern ciliate taxonomy should be performed by means of detailed living observation, stained preparations and molecular information. For those species that have been reported in previous studies, it is necessary to provide as much useful information as possible using state-of-the-art methods in order to resolve taxonomic anomalies.

Sections du résumé

BACKGROUND
Heterotrichous ciliates are common members of microeukaryote communities which play important roles in both the transfer of material and the flow of energy in aquatic food webs. This group has been known for over two centuries due to their large body size and cosmopolitan distribution. Nevertheless, species identification and phylogenetic relationships of heterotrichs remain challenging due to the lack of accurate morphological information and insufficient molecular data.
RESULTS
The morphology and phylogeny of two heterotrichous ciliates, namely Gruberia foissneri spec. nov. and Linostomella vorticella (Ehrenberg, 1833) Aescht in Foissner et al., 1999, were studied using rigorous methods (living morphology, stained preparations, and small subunit rDNA sequence data). Gruberia foissneri spec. nov. is morphologically very similar to G. uninucleata Kahl, 1932, however, it can be distinguished from the latter by having more ciliary rows (about 32 vs. about 20) and macronuclear shape (sausage-shaped vs. ellipsoid). Based on a combination of previous and present studies, an improved diagnosis of L. vorticella is supplied and several taxonomic anomalies are clarified. In addition, phylogenetic analyses based on SSU rDNA sequence data support the generic assignment of these two species.
CONCLUSIONS
Modern ciliate taxonomy should be performed by means of detailed living observation, stained preparations and molecular information. For those species that have been reported in previous studies, it is necessary to provide as much useful information as possible using state-of-the-art methods in order to resolve taxonomic anomalies.

Identifiants

pubmed: 33008292
doi: 10.1186/s12866-020-01879-4
pii: 10.1186/s12866-020-01879-4
pmc: PMC7531149
doi:

Substances chimiques

RNA, Ribosomal, 18S 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

297

Subventions

Organisme : Natural Science Foundation of China
ID : 31970398
Organisme : Natural Science Foundation of China
ID : 31672251
Organisme : Marine S & T Fund of Shandong Province for Pilot National 457 Laboratory for Marine Science and Technology
ID : 2018SDKJ0406-1

Références

J Eukaryot Microbiol. 2004 Jan-Feb;51(1):49-59
pubmed: 15068265
Sci China Life Sci. 2019 Feb;62(2):203-214
pubmed: 30671886
Cell Cycle. 2019 Feb;18(3):288-298
pubmed: 30563432
Sci Rep. 2016 Apr 29;6:24874
pubmed: 27126745
Eur J Protistol. 2016 Apr;53:11-9
pubmed: 26773904
J Eukaryot Microbiol. 2018 Nov;65(6):902-912
pubmed: 29779265
Mol Phylogenet Evol. 2014 Sep;78:118-35
pubmed: 24859684
Mol Phylogenet Evol. 2016 Feb;95:229-46
pubmed: 26549427
Mol Biol Evol. 2011 Oct;28(10):2731-9
pubmed: 21546353
Syst Biol. 2012 May;61(3):539-42
pubmed: 22357727
Proc Biol Sci. 2017 Jul 26;284(1859):
pubmed: 28747472
J Eukaryot Microbiol. 2013 Nov-Dec;60(6):609-14
pubmed: 23870015
Syst Biol. 2007 Aug;56(4):564-77
pubmed: 17654362
Mol Biol Evol. 2000 Apr;17(4):540-52
pubmed: 10742046
Eur J Protistol. 2018 Aug;65:16-30
pubmed: 29793141
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
J Eukaryot Microbiol. 2017 Jul;64(4):539-554
pubmed: 28061024
Eur J Protistol. 2017 Oct;61(Pt A):278-293
pubmed: 28778557
Eur J Protistol. 2015 Feb;51(1):66-78
pubmed: 25553552
Gene. 1988 Nov 30;71(2):491-9
pubmed: 3224833
J Eukaryot Microbiol. 2019 Nov;66(6):925-936
pubmed: 31112318

Auteurs

Yong Chi (Y)

Institute of Evolution and Marine Biodiversity, and College of Fisheries, Ocean University of China, Qingdao, 266003, China.

Yuqing Li (Y)

Institute of Evolution and Marine Biodiversity, and College of Fisheries, Ocean University of China, Qingdao, 266003, China.

Qianqian Zhang (Q)

Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China.
Center for Ocean Mega-Science, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao, 266071, China.

Mingzhen Ma (M)

Institute of Evolution and Marine Biodiversity, and College of Fisheries, Ocean University of China, Qingdao, 266003, China.

Alan Warren (A)

Department of Life Sciences, Natural History Museum, London, SW7 5BD, UK.

Xiangrui Chen (X)

School of Marine Sciences, Ningbo University, Ningbo, 315211, China. xiangruichen@126.com.

Weibo Song (W)

Institute of Evolution and Marine Biodiversity, and College of Fisheries, Ocean University of China, Qingdao, 266003, China. wsong@ouc.edu.cn.

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Classifications MeSH