AmpliconDesign - an interactive web server for the design of high-throughput targeted DNA methylation assays.
DNA methylation
analysis pipeline
bisulfite sequencing
epityper
massarray
primer design
targeted sequencing
Journal
Epigenetics
ISSN: 1559-2308
Titre abrégé: Epigenetics
Pays: United States
ID NLM: 101265293
Informations de publication
Date de publication:
09 2021
09 2021
Historique:
pubmed:
27
10
2020
medline:
13
1
2022
entrez:
26
10
2020
Statut:
ppublish
Résumé
Targeted analysis of DNA methylation patterns based on bisulfite-treated genomic DNA (BT-DNA) is considered as a gold-standard for epigenetic biomarker development. Existing software tools facilitate primer design, primer quality control or visualization of primer localization. However, high-throughput design of primers for BT-DNA amplification is hampered by limits in throughput and functionality of existing tools, requiring users to repeatedly perform specific tasks manually. Consequently, the design of PCR primers for BT-DNA remains a tedious and time-consuming process. To bridge this gap, we developed
Identifiants
pubmed: 33100132
doi: 10.1080/15592294.2020.1834921
pmc: PMC8451469
doi:
Substances chimiques
Sulfites
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
933-939Références
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