Gene duplication drives genome expansion in a major lineage of Thaumarchaeota.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
30 10 2020
30 10 2020
Historique:
received:
20
04
2020
accepted:
21
09
2020
entrez:
31
10
2020
pubmed:
1
11
2020
medline:
18
11
2020
Statut:
epublish
Résumé
Ammonia-oxidising archaea of the phylum Thaumarchaeota are important organisms in the nitrogen cycle, but the mechanisms driving their radiation into diverse ecosystems remain underexplored. Here, existing thaumarchaeotal genomes are complemented with 12 genomes belonging to the previously under-sampled Nitrososphaerales to investigate the impact of lateral gene transfer (LGT), gene duplication and loss across thaumarchaeotal evolution. We reveal a major role for gene duplication in driving genome expansion subsequent to early LGT. In particular, two large LGT events are identified into Nitrososphaerales and the fate of these gene families is highly lineage-specific, being lost in some descendant lineages, but undergoing extensive duplication in others, suggesting niche-specific roles. Notably, some genes involved in carbohydrate transport or coenzyme metabolism were duplicated, likely facilitating niche specialisation in soils and sediments. Overall, our results suggest that LGT followed by gene duplication drives Nitrososphaerales evolution, highlighting a previously under-appreciated mechanism of genome expansion in archaea.
Identifiants
pubmed: 33127895
doi: 10.1038/s41467-020-19132-x
pii: 10.1038/s41467-020-19132-x
pmc: PMC7603488
doi:
Substances chimiques
Proteome
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
5494Subventions
Organisme : Medical Research Council
ID : MR/M50161X/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/L015080/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/R015171/1
Pays : United Kingdom
Investigateurs
William H Gaze
(WH)
Jennifer Holden
(J)
Andrew Mead
(A)
Sebastien Raguideau
(S)
Christopher Quince
(C)
Andrew C Singer
(AC)
Elizabeth M H Wellington
(EMH)
Lihong Zhang
(L)
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