Expansion segments in bacterial and archaeal 5S ribosomal RNAs.
Alteromonadaceae
/ classification
Base Pairing
Base Sequence
Clostridiales
/ classification
Firmicutes
/ classification
Genome, Archaeal
Genome, Bacterial
Halobacteriales
/ classification
Nucleic Acid Conformation
Phylogeny
RNA, Archaeal
/ chemistry
RNA, Bacterial
/ chemistry
RNA, Ribosomal, 5S
/ chemistry
Thermoanaerobacterium
/ classification
5S rRNA
archaea
bacteria
expansion segment
ribosome
Journal
RNA (New York, N.Y.)
ISSN: 1469-9001
Titre abrégé: RNA
Pays: United States
ID NLM: 9509184
Informations de publication
Date de publication:
02 2021
02 2021
Historique:
received:
28
07
2020
accepted:
09
11
2020
pubmed:
14
11
2020
medline:
22
4
2021
entrez:
13
11
2020
Statut:
ppublish
Résumé
The large ribosomal RNAs of eukaryotes frequently contain expansion sequences that add to the size of the rRNAs but do not affect their overall structural layout and are compatible with major ribosomal function as an mRNA translation machine. The expansion of prokaryotic ribosomal RNAs is much less explored. In order to obtain more insight into the structural variability of these conserved molecules, we herein report the results of a comprehensive search for the expansion sequences in prokaryotic 5S rRNAs. Overall, 89 expanded 5S rRNAs of 15 structural types were identified in 15 archaeal and 36 bacterial genomes. Expansion segments ranging in length from 13 to 109 residues were found to be distributed among 17 insertion sites. The strains harboring the expanded 5S rRNAs belong to the bacterial orders
Identifiants
pubmed: 33184227
pii: rna.077123.120
doi: 10.1261/rna.077123.120
pmc: PMC7812874
doi:
Substances chimiques
RNA, Archaeal
0
RNA, Bacterial
0
RNA, Ribosomal, 5S
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
133-150Informations de copyright
© 2021 Stepanov and Fox; Published by Cold Spring Harbor Laboratory Press for the RNA Society.
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