Complete chloroplast genome sequencing of ten wild Fragaria species in China provides evidence for phylogenetic evolution of Fragaria.

Biodiversity Fragaria / genetics Genome, Chloroplast Genome, Plant Phylogeny Polyploidy Temperature
Chloroplast genome Fragaria Phylogeny Wild species

Journal

Genomics
ISSN: 1089-8646
Titre abrégé: Genomics
Pays: United States
ID NLM: 8800135

Informations de publication

Date de publication:
05 2021
Historique:
received: 12 10 2020
revised: 02 01 2021
accepted: 23 01 2021
pubmed: 12 3 2021
medline: 1 4 2022
entrez: 11 3 2021
Statut: ppublish

Résumé

Complete chloroplast genomes of ten wild Fragaria species native to China were sequenced. Phylogenetic analysis clustered Fragaria species into two clades: The south clade (F. iinumae, F. chinensis, F. pentaphylla, F. nilgerrensis, F. daltoniana, F. corymbosa, F. moupinensis, F. tibetica, F. nipponica, F. gracilis, and F. nubicola and north clade (F. viridis, F. orientalis, F. moschata, F. mandshurica, F. vesca, F. chiloensis, F. virginiana, and F. × ananassa), while F. iinumae is the oldest extant species. Molecular clock analysis suggested present Fragaria species share a common ancestor 3.57 million years ago (Ma), F. moschata and octoploid species evolve 0.89 and 0.97 Ma, respectively, but F. moschata be not directly involved in current octoploid species formation. Drastic global temperature change since the Palaeocene-Eocene, approx. 55 Ma, especially during uplifting of the Qinghai-Tibet plateau and quaternary glaciation may have driven the formation of Fragaria, separation of two groups and polyploidization.

Identifiants

DOI: 10.1016/j.ygeno.2021.01.027 PMID: 33705887
pubmed: 33705887
pii: S0888-7543(21)00090-2
doi: 10.1016/j.ygeno.2021.01.027
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1170-1179

Informations de copyright

Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.

Auteurs

Jian Sun (J)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China.

Rui Sun (R)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China.

Huabo Liu (H)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China.

Linlin Chang (L)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China.

Shuangtao Li (S)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China.

Mizhen Zhao (M)

Institute of Pomology, Jiangsu Academy of Agricultural Sciences, 210014 Nanjing, China.

Carol Shennan (C)

Environmental Studies, University of California Santa Cruz, 95064 Santa Cruz, CA, USA. Electronic address: cshennan@ucsc.edu.

Jiajun Lei (J)

Department of Horticulture, Shenyang Agricultural University, 110866 Shenyang, China.

Jing Dong (J)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China.

Chuanfei Zhong (C)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China.

Li Xue (L)

Department of Horticulture, Shenyang Agricultural University, 110866 Shenyang, China.

Yongshun Gao (Y)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China.

Guixia Wang (G)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China. Electronic address: wgxia1972@163.com.

Yuntao Zhang (Y)

Beijing Academy of Forestry and Pomology Sciences; Beijing Engineering Research Center for Strawberry; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture, 100093 Beijing, China. Electronic address: zhytao1963@126.com.

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Classifications MeSH

questionsmedicales.fr › Environnement et santé publique › Environnement › Écosystème › Biodiversité › Complete chloroplast genome sequencing of ten...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Rosanae › Rosales › Rosaceae › Fragaria › Complete chloroplast genome sequencing of ten...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome plastidique › Génome de chloroplaste › Complete chloroplast genome sequencing of ten...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome végétal › Complete chloroplast genome sequencing of ten...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Complete chloroplast genome sequencing of ten...
questionsmedicales.fr › Phénomènes génétiques › Ploïdies › Polyploïdie › Complete chloroplast genome sequencing of ten...
questionsmedicales.fr › Environnement et santé publique › Environnement › Concepts météorologiques › Atmosphère › Temps (météorologie) › Température › Complete chloroplast genome sequencing of ten...