Genome and transcriptome of a pathogenic yeast, Candida nivariensis.
Candida nivariensis
genome assembly
nanopore sequencing
pathogenic yeast
transcriptome
Journal
G3 (Bethesda, Md.)
ISSN: 2160-1836
Titre abrégé: G3 (Bethesda)
Pays: England
ID NLM: 101566598
Informations de publication
Date de publication:
14 07 2021
14 07 2021
Historique:
received:
05
02
2021
accepted:
11
04
2021
pubmed:
24
4
2021
medline:
15
11
2022
entrez:
23
4
2021
Statut:
ppublish
Résumé
We present a highly contiguous genome and transcriptome of the pathogenic yeast, Candida nivariensis. We sequenced both the DNA and RNA of this species using both the Oxford Nanopore Technologies and Illumina platforms. We assembled the genome into an 11.8 Mb draft composed of 16 contigs with an N50 of 886 Kb, including a circular mitochondrial sequence of 28 Kb. Using direct RNA nanopore sequencing and Illumina cDNA sequencing, we constructed an annotation of our new assembly, supplemented by lifting over genes from Saccharomyces cerevisiae and Candida glabrata.
Identifiants
pubmed: 33890630
pii: 6247763
doi: 10.1093/g3journal/jkab137
pmc: PMC8496292
pii:
doi:
Substances chimiques
RNA
63231-63-0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : NHGRI NIH HHS
ID : R01 HG009190
Pays : United States
Organisme : CIHR
ID : DFS-157831
Pays : Canada
Informations de copyright
© The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America.
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