Structural basis for the activation of the DEAD-box RNA helicase DbpA by the nascent ribosome.

Adenosine Triphosphate / metabolism DEAD-box RNA Helicases / chemistry Escherichia coli / genetics Escherichia coli Proteins / chemistry Kinetics Nucleic Acid Conformation Protein Conformation RNA, Ribosomal, 23S / chemistry Ribosomes / metabolism
DEAD-box helicase NMR spectroscopy enzyme regulation molecular mechanism ribosome assembly

Journal

Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876

Informations de publication

Date de publication:
31 08 2021
Historique:
entrez: 28 8 2021
pubmed: 29 8 2021
medline: 21 12 2021
Statut: ppublish

Résumé

The adenosine triphosphate (ATP)-dependent DEAD-box RNA helicase DbpA from

Identifiants

DOI: 10.1073/pnas.2105961118 PMID: 34453003 PMC: PMC8536315
pubmed: 34453003
pii: 2105961118
doi: 10.1073/pnas.2105961118
pmc: PMC8536315
pii:
doi:

Substances chimiques

Escherichia coli Proteins 0
RNA, Ribosomal, 23S 0
Adenosine Triphosphate 8L70Q75FXE
dbpA protein, E coli EC 3.6.1.-
DEAD-box RNA Helicases EC 3.6.4.13

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

Copyright © 2021 the Author(s). Published by PNAS.

Déclaration de conflit d'intérêts

The authors declare no competing interest.

Références

FEBS J. 2008 Aug;275(15):3772-82
pubmed: 18565105
Biochemistry. 1998 Dec 1;37(48):16989-96
pubmed: 9836593
Cell. 2006 Apr 21;125(2):287-300
pubmed: 16630817
Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4046-50
pubmed: 20160110
Nucleic Acids Res. 2013 Aug;41(14):7073-83
pubmed: 23700310
RNA. 2001 May;7(5):702-9
pubmed: 11350034
Nucleic Acids Res. 2014;42(16):10644-54
pubmed: 25123660
J Mol Biol. 2010 Sep 17;402(2):412-27
pubmed: 20673833
Proc Natl Acad Sci U S A. 2008 Jan 15;105(2):548-53
pubmed: 18184816
Nucleic Acids Res. 2016 Feb 29;44(4):1800-12
pubmed: 26823502
Biochim Biophys Acta. 2013 Aug;1829(8):884-93
pubmed: 23416748
RNA. 2016 Jul;22(7):1055-64
pubmed: 27194011
Nucleic Acids Res. 2004 Jun 01;32(10):3028-32
pubmed: 15173385
J Mol Biol. 2008 Mar 14;377(1):193-205
pubmed: 18237742
Cell. 2016 Dec 1;167(6):1610-1622.e15
pubmed: 27912064
J Am Chem Soc. 2011 Oct 5;133(39):15514-23
pubmed: 21819147
J Biol Chem. 2005 Oct 21;280(42):35499-505
pubmed: 16118224
Biopolymers. 2017 Mar;107(3):
pubmed: 27813083
RNA. 2016 Mar;22(3):408-15
pubmed: 26755693
Microbiol Mol Biol Rev. 2007 Sep;71(3):477-94
pubmed: 17804668
Biochemistry. 2009 Nov 17;48(45):10679-81
pubmed: 19839642
Nucleic Acids Res. 2006;34(15):4189-97
pubmed: 16935881
Biochemistry. 2002 Mar 19;41(11):3693-702
pubmed: 11888286
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Dec 1;62(Pt 12):1191-5
pubmed: 17142894
Biochemistry. 2005 May 31;44(21):7903-11
pubmed: 15910005
EMBO J. 2001 Oct 1;20(19):5503-12
pubmed: 11574482
Nucleic Acids Res. 2009 Oct;37(19):6503-14
pubmed: 19734347
J Mol Biol. 2010 Oct 1;402(4):629-37
pubmed: 20691700
Biomol NMR Assign. 2021 Apr;15(1):121-128
pubmed: 33277687
Mol Cell. 2009 Sep 11;35(5):598-609
pubmed: 19748356
Nat Rev Mol Cell Biol. 2011 Jul 22;12(8):505-16
pubmed: 21779027
Annu Rev Biophys. 2012;41:247-67
pubmed: 22404686
Nat Struct Mol Biol. 2015 Apr;22(4):336-41
pubmed: 25775265
Nucleic Acids Res. 2019 Nov 18;47(20):10842-10851
pubmed: 31712821
J Biol Chem. 2009 Apr 17;284(16):10296-300
pubmed: 19244245
Nucleic Acids Res. 2008 Jan;36(1):41-50
pubmed: 17986459
Nucleic Acids Res. 2017 Feb 28;45(4):1994-2006
pubmed: 28115633
Nature. 2011 Apr 14;472(7342):238-42
pubmed: 21441902
Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20203-8
pubmed: 19088196
Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):E4707-16
pubmed: 26261349
Biophys J. 2008 Jan 1;94(1):L01-3
pubmed: 17951299

Auteurs

Jan Philip Wurm (JP)

Institute of Biophysics and Physical Biochemistry, Regensburg Center for Biochemistry, University of Regensburg, 93053 Regensburg, Germany Remco.Sprangers@biologie.uni-regensburg.de Jan-Philip.Wurm@biologie.uni-regensburg.de.
ORCID: 0000-0003-0985-7273

Katarzyna-Anna Glowacz (KA)

Institute of Biophysics and Physical Biochemistry, Regensburg Center for Biochemistry, University of Regensburg, 93053 Regensburg, Germany.

Remco Sprangers (R)

Institute of Biophysics and Physical Biochemistry, Regensburg Center for Biochemistry, University of Regensburg, 93053 Regensburg, Germany Remco.Sprangers@biologie.uni-regensburg.de Jan-Philip.Wurm@biologie.uni-regensburg.de.
ORCID: 0000-0001-7323-6047

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Classifications MeSH

questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Nucléotides › Ribonucléotides › Nucléotides adényliques › Adénosine triphosphate › Structural basis for the activation of the...
questionsmedicales.fr › Enzymes et coenzymes › Enzymes › Transferases › Phosphotransferases › Nucleotidyltransferases › RNA nucleotidyltransferases › RNA helicases › DEAD-box RNA helicases › Structural basis for the activation of the...
questionsmedicales.fr › Bactéries › Proteobacteria › Gammaproteobacteria › Enterobacteriaceae › Escherichia › Escherichia coli › Structural basis for the activation of the...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Protéines bactériennes › Protéines Escherichia coli › Structural basis for the activation of the...
questionsmedicales.fr › Phénomènes chimiques › Phénomènes biochimiques › Cinétique › Structural basis for the activation of the...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Conformation d'acide nucléique › Structural basis for the activation of the...
questionsmedicales.fr › Phénomènes chimiques › Phénomènes biochimiques › Conformation moléculaire › Conformation des protéines › Structural basis for the activation of the...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ARN › ARN ribosomique › ARN ribosomique 23S › Structural basis for the activation of the...
questionsmedicales.fr › Cellules › Structures cellulaires › Espace intracellulaire › Cytoplasme › Structures cytoplasmiques › Organites › Ribosomes › Structural basis for the activation of the...