Diversification in the Rosales is influenced by dispersal, geographic range size, and pre-existing species richness.

HiSSE MuSSE PGLS Rosales clade selection diversification geographic range size seed dispersal

Journal

American journal of botany
ISSN: 1537-2197
Titre abrégé: Am J Bot
Pays: United States
ID NLM: 0370467

Informations de publication

Date de publication:
06 2022
Historique:
revised: 17 03 2022
received: 02 12 2021
accepted: 18 03 2022
pubmed: 22 4 2022
medline: 29 6 2022
entrez: 21 4 2022
Statut: ppublish

Résumé

Biodiversity results from origination and extinction, justifying interest in identifying traits that influence this balance. Traits implicated in the success or failure of lineages include dispersal, colonization ability, and geographic range size. We investigated the impact of dispersal and range size on contemporary diversity in the Rosales. We used the multiple-state speciation and extinction (MuSSE) method to explore the effects on genus-level diversification of two genus-level traits (geographic range size and within-genus proclivity to speciate) and two species traits (seed dispersal and growth habit) and the multiple hidden-state speciation and extinction (MuHiSSE) method for species-level associations. Finally, we conducted a PGLS (phylogenetic least-squares) analysis to distinguish between speciation within genera versus origination of new genera. At the species level, animal dispersal enhances diversification rate in both woody and herbaceous lineages, while woody lineages without animal dispersal have higher extinction rates than speciation rates. At the genus level, herbaceous taxa have positive diversification rates regardless of other character states. Diversification rate variation is also explained by two interactions: (1) a three-way interaction between large geographic range, animal-mediated dispersal, and high within-genus species richness, whereby genera possessing all three traits have high diversification rates, and (2) a four-way interaction by which the three-way interaction is stronger in woody genera than in herbaceous genera. Colonization ability may underlie the relationship between dispersal type and range size and may influence past diversification rates by decreasing extinction rates during late Cenozoic climate volatility. Thus, colonization ability could be used to predict future extinction risk to aid conservation.

Identifiants

pubmed: 35446437
doi: 10.1002/ajb2.1855
doi:

Banques de données

Dryad
['10.5061/dryad.jsxksn0bv']

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

922-938

Informations de copyright

© 2022 Botanical Society of America. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.

Références

Abramowitz, M., and I. A., Stegun, 1972. Stirling numbers of the second kind. In Handbook of mathematical functions and formulas, graphs, and mathematical tables, 9th ed. Dover, Mineola, New York.
Alfred, R. 1925. Amelosorbus, a new bigeneric hybrid. Journal of the Arnold Arboretum 6: 154-156.
Alley, R. B., J. Marotzke, W. D. Nordhaus, J. T. Overpeck, D. M. Peteet, R. A. Pielke, Jr., R. T. Pierrhumbert, et al. 2003. Abrupt climate change. Science 299: 2005-2010.
Alroy, J. 2008. Dynamics of origination and extinction in the marine fossil record. Proceedings of the National Academy of Sciences, USA 105: 11536-11542.
Angiosperm Phylogeny Group. 2016. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Botanical Journal of the Linnean Society 181: 1-20.
Barnosky, A. D., P. L. Koch, R. S. Feranec, S. L. Wing, and A. B. Shabel. 2004. Assessing the causes of Late Pleistocene extinctions on the continents. Science 306: 70-75.
Beaulieu, J. M., B. C. O'Meara, and M. J. Donoghue. 2013. Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habit in campanulid angiosperms. Systematic Biology 62: 725-737.
Beaulieu, J. M., and B. C. O'Meara. 2016. Detecting hidden diversification in models of trait-dependent speciation and extinction. Systematic Biology 65: 583-601.
Bolmgren, K., and O. Eriksson. 2005. Fleshy fruits-origins, niche shifts, and diversification. Oikos 109: 255-272.
Burnham, K. P., and D. R. Anderson. 2002. Model selection and multimodel inference. Springer, NY, NY, USA.
Calvillo-Canadell, L., and S. R. Cevallos-Ferriz. 2007. Reproductive structures of Rhamnaceae from the Cerro del Pueblo (Late Cretaceous, Coahuila) and Coatzingo (Oligocene, Puebla) Formations, Mexico. American Journal of Botany 94: 1658-1659.
Campbell, C. S., and T. A. Dickinson. 1990. Apomixis, patterns of variation, and species concepts in subfam. Maloideae (Rosaceae). Systematic Botany 15: 124-135.
Carlson A. E. 2013. The Younger Dryas climate event. InS. A. Elias [ed.], The encyclopedia of quaternary science, vol. 3, 126-134. Elsevier, Amsterdam, Netherlands.
Congreve, C. R., A. R. Falk, and J. C. Lamsdell. 2018. Biological hierarchies and the nature of extinction. Biological Reviews 93: 811-826.
Darwin, C. 1859. The origin of species. Cambridge University Press, Cambridge, UK.
Devore, M. L., and K. B. Pigg. 2007. A brief review of the fossil history of the family Rosaceae with a focus on the Eocene Okanogan Highlands of eastern Washington State, USA, and British Columbia, Canada. Plant Systematics and Evolution 266: 45-57.
Donohoe, A., K. C. Armour, A. G. Pendergrass, and D. S. Battisti. 2014. Shortwave and longwave radiative contributions to global warming under increasing CO2. Proceedings of the National Academy of Sciences, USA 111: 16700-16705.
Drummond, A. J., M. A. Suchard, D. Xie, and A. Rambaut. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29: 1969-1973.
Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
FitzJohn, R. G. 2012. Diversitree: comparative phylogenetic analyses of diversification in R. Methods in Ecology and Evolution 3: 1084-1092.
Foote, M. 2005. Pulsed origination and extinction in the marine realm. Paleobiology 31: 6-20.
Foote, M., and A. I. Miller. 2013. Determinants of early survival in marine animal genera. Paleobiology 39: 171-192.
Friis, I. 1993. Urticaceae. In K. Kubitzki [ed.], The families and genera of vascular plants, vol. II, 612-629. Springer, Berlin, Germany.
Goloneva, L. B. 2010. The taxonomy and morphological diversity of leaves of Paraprotophyllum (Platanaceae) from the Late Cretaceous of Sakhalin Island. Paleontological Journal 44: 1270-1280.
Graham, A. 2010. A natural history of the New World: the ecology and evolution of plants in the Americas. University of Chicago Press, Chicago, IL, USA.
Held, I. M., M. Winton, K. Takahashi, T. Delworth, F. Zeng, and G. K. Vallis. 2010. Probing the fast and slow components of global warming by returning abruptly to preindustrial forcing. Journal of Climate 23: 2418-2427.
Hughes, N. C. 2007. The evolution of trilobite body patterning. Annual Review of Earth and Planetary Science 35: 401-434.
Jablonski, D. 1986. Background and mass extinctions: the alternation of macroevolutionary regimes. Science 231: 139.
Jablonski, D. 2005. Mass extinctions and macroevolution. Paleobiology 31: 192-210.
Jablonski, D., and D. M. Raup. 1995. Selectivity of end-Cretaceous marine bivalve extinctions. Science 268: 389-391.
Jablonski, D., and G. Hunt. 2006. Larval ecology, geographic range, and species survivorship in Cretaceous mollusks: organismic versus species-level explanations. American Naturalist 168: 556-564.
Johnson, K. G., A. F. Budd, and T. A. Stemann. 1995. Extinction selectivity and ecology of Neogene Caribbean coral reefs. Paleobiology 21: 52-73.
Kalkman, C. 2004. Rosaceae. In K. Kubitzki [ed.], The families and genera of vascular plants, vol. VI, 343-386. Springer, Berlin, Germany.
Kubitzki, K. 1993. Cannabaceae. In K. Kubitzki [ed.], The families and genera of vascular plants, vol. II, 204-205. Springer, Berlin, Germany.
Kvaček, Z., and S. R. Manchester. 2004. Vegetative and reproductive structure of the extinct Platanus neptuni from the Tertiary of Europe and relationships within the Platanaceae. Plant Systamtics and Evolution 244: 1-29.
Lambeck, K., Y. Yokoyama, and T. Purcell. 2002. Into and out of the Last Glacial Maximum: sea-level change during oxygen isotope stages 3 and 2. Quaternary Science Reviews 21: 343-360.
Larson-Johnson, K. 2016. Phylogenetic investigation of the complex evolutionary history of dispersal mode and diversification rates across living and fossil Fagales. New Phytologist 209: 418-435.
Liow, L. H., T. B. Quental, and C. R. Marshall. 2010. When can decreasing diversification rates be detected with molecular phylogenies and the fossil record? Systematic Biology 59: 646-659.
Lu, L.-M., L.-F. Mao, T. Yang, J.-F. Ye, B. Liu, H.-L. Li, M. Sun, et al. 2018. Evolutionary history of the angiosperm flora of China. Nature 554: 234-238.
Madden, T. 2002. The BLAST sequence analysis tool. In J. McEntyre and J. Ostell [eds.], The NCBI handbook. National Center for Biotechnology Information, Bethesda, MD, USA.
Magallón, S., P. R. Crane, and P. S. Herendeen. 1999. Phylogenetic pattern, diversity, and diversification of eudicots. Annals of the Missouri Botanical Garden 86: 297-372.
Manchester, S. R. 1986. Vegetative and reproductive morphology of an extinct plane tree (Platanaceae) from the Eocene of western North America. Botanical Gazette 147: 200-226.
Manchester, S. R. 1989. Systematics and fossil history of the Ulmaceae. In P. R Crane and S. Blackmore [eds.], Evolution, systematics, and fossil history of the Hamamelidae, 221-251. Clarendon, Oxford, UK.
Manchester, S. R., M. A. Akhmetiev, and T. M. Kodrul. 2002. Leaves and fruits of Celtis aspera (Newberry) comb. nov. (Celtidaceae) from the Paleocene of North America and eastern Asia. International Journal of Plant Sciences 163: 725-736.
Medan, D., and C. Schirarend. 2004. Rhamnaceae. In K. Kubitzki [ed.], The families and genera of vascular plants, vol. VI, 320−338. Springer, Berlin, Germany.
Meyr, E. 1944. Wallace's Line in the light of recent zoogeographic studies. Quarterly Review of Biology 1: 1-14.
Moles, A. T., D. A. Ackerly, J. C. Tweddle, J. B. Dickie, R. Smith, M. R. Leishman, M. A. Mayfield, et al. 2007. Global patterns in seed size. Global Ecology and Biogeography 16: 109-116.
O'Meara, B. C., S. D. Smith, W. S. Armbruster, L. D. Harder, C. R. Hardy, L. C. Hileman, L. Hufford, et al. 2016. Non-equilibrium interactions and floral trait interactions shape angiosperm diversity. Proceedings of the Royal Society, B, Biological Sciences 283: 20152304.
Onstein, R. E., W. J. Baker, T. L. P. Couvreur, S. Faurby, L. Herrera-Alcina, J.-C. Svenning, and W. D. Kissling. 2018. To adapt or go extinct? The fate of megafaunal palm fruits under past global change. Proceedings of the Royal Society, B, Biological Sciences 285: 20180882. https://doi.org/10.1098/rspb.2018.0882
Payne, J., and S. Finnegan. 2007. The effect of geographic range on extinction risk during background and mass extinction. Proceedings of the National Academy of Sciences, USA 104: 10506-10511.
Pearson, R. C., and J. D. Obradovich. 1977. Eocene rocks in northeast Washington-radiometric ages and correlation. Geological Survey Bulletin 1433.
Peters, S. E. 2008. Environmental determinants of extinction selectivity in the fossil record. Nature 464: 626-629.
Potter, D., T. Eriksson, R. C. Evans, S. Oh, J. E. E. Smedmark, D. R. Morgan, M. Kerr, et al. 2007. Phylogeny and classification of the Rosaceae. Plant Systematics and Evolution 266: 5-43.
Price, S. A., S. S. B. Hopkins, K. K. Smith, and V. Louise Roth. 2012. Tempo of trophic evolution and its impact on mammalian diversification. Proceedings of the National Academy of Sciences, USA 109: 7008-7012.
Qiao, H., E. E. Shaupe, J. Soberón, A. T. Peterson, and C. A. Myers. 2016. Impacts of niche breadth and dispersal ability on macroevolutionary patterns. American Naturalist 188: 149-162.
Rabinowitz, D. 1981. Seven forms of rarity. In H. Synge [ed.], The biological aspects of rare plant conservation, 205-217. Wiley, Hoboken, NJ, USA.
Rabosky, D. L., and E. E. Goldberg. 2015. Model inadequacy and mistaken inferences of trait-dependent speciation. Systematic Biology 64: 340-355.
Rabosky, D. L., and A. R. McCune. 2009. Reinventing species selection with molecular phylogenetics. Trends in Ecology and Evolution 25: 68-74.
Raup, D. M., and J. J. Sepkoski, Jr. 1982. Mass extinctions in the marine fossil record. Science 215: 1501−1503.
Reginato, M., T. N. C. Vlasconcelos, R. Kriebel, and A. O. Simões. 2020. Is dispersal mode a driver of diversification and geographical distribution in the tropical plant family Melastomataceae? Molecular Phylogenetics and Evolution 148: 106815.
Ricklefs, R. E., and R. E. Latham. 1992. Intercontinental correlation of geographical ranges suggests stasis in ecological traits of relict genera of temperate perennial herbs. American Naturalist 139: 1305-1321.
Rohwer, J. G. 1993. Moraceae. In K. Kubitzki [ed.], The families and genera of vascular plants, vol. II, 438-452. Springer, Berlin, Germany.
Sanderson, M. J., and M. J. Donoghue. 1994. Shifts in the diversification rate with the origin of angiosperms. Science 264: 1590-1593.
Scotese, R. C. 2001. Atlas of earth history. PALEOMAP Project, Arlington, TX, USA.
Sepkoski, J. J., Jr. 1981. A factor analytic description of the marine fossil record. Paleobiology 7: 36-53.
Sepkoski, J. J., Jr. 1984. A kinetic model of Phanerozoic taxonomic diversity. III. Post-Paleozoic families and mass extinctions. Paleobiology 10: 246-267.
Simpson, G. G. 1944. Mode and tempo in evolution. Columbia University Press, NY, NY, USA.
Simpson, A. G., P. J. Wagner, S. L. Wing, and C. Fenster. 2018. Binary-state speciation and extinction method is only conditionally robust to realistic violation of its assumptions. BMC Evolutionary Biology 18: 69.
Simpson, A. G., S. L. Wing, and C. Fenster. 2021. Data from: Diversification in the Rosales is influenced by dispersal, geographic range size, and pre-existing species richness. Dryad Digital Repository https://doi.org/10.5061/dryad.jsxksn0bv
Stadler, T., D. L. Rabosky, R. E. Ricklefs, and F. Bokma. 2014. On age and species richness of higher taxa. American Naturalist 184: 447-455.
Stebbins, G. L. 1971. Adaptive radiation and reproductive characteristics of angiosperms II: seeds and seedlings. Annual Review of Ecology and Systematics 2: 237-260.
Stockey, R. A. 2001. The Princeton Chert. In D. E. G. Briggs and P. R. Crowther [eds.], Paleobiology II, 359-362. Blackwell, Oxford, UK.
Strömberg, C. A. E. 2011. Evolution of grasses and grassland ecosystems. Annual Review of Earth and Planetary Sciences 39: 517-544.
Symons, M. R. E., and S. P. Blomberg. 2014. A primer on phylogenetic least squares. In L. Z. Garamszegi [ed.], Modern Phylogenetic Comparative Methods and their Application in Evolutionary Biology, 105-130. Springer, Berlin, Germany.
Tiffney, B. H. 2004. Vertebrate dispersal of seed plants through time. Annual Review of Ecology and Systematics 35: 1-29.
Tiffney, B. H., and S. J. Mazer. 1995. Angiosperm growth habit, dispersal and diversification revisited. Evolutionary Ecology 9: 93-117.
Todzia, C. A. 1993. Ulmaceae. In K. Kubitzki [ed.], The families and genera of vascular plants, vol. II, 603-611. Springer, Berlin, Germany.
Vamosi, S. M., and J. C. Vamosi. 2012. Perspective: causes and consequences of range size variation: the influence of traits, speciation, and extinction. Frontiers in Biogeography 4: 168-177.
Wing, S. L., G. J. Harrington, F. A. Smith, J. I. Bloch, D. M. Boyer, and K. H. Freeman. 2005. Transient floral change and rapid global warming at the Paleocene-Eocene boundary. Science 310: 993-996.
Zachos, J. C., G. R. Dickens, and R. E. Zeebe. 2008. An early Cenozoic prospective on greenhouse warming and carbon-cycle dynamics. Nature 451: 279-283.
Zachos, J., M. Pagani, L. Sloan, E. Thomas, and K. Billups. 2001. Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292: 686-693.
Zhang, S.-D., D. E. Soltis, Y. Yang, D.-Z. Li, and T.-S. Yi. 2011. Multi-gene analysis provides a well-supported phylogeny of the Rosales. Molecular Phylogenetics and Evolution 60: 21-28.
Zhang, X., G. Lohmann, G. Knorr, and C. Purcell. 2014. Abrupt glacial climate shifts caused by ice sheet changes. Nature 512: 290-294.

Auteurs

Andrew G Simpson (AG)

Program in Behavior, Ecology, Evolution, Systematics, University of Maryland, College Park, MD, USA.

Scott L Wing (SL)

Program in Behavior, Ecology, Evolution, Systematics, University of Maryland, College Park, MD, USA.

Charles B Fenster (CB)

Program in Behavior, Ecology, Evolution, Systematics, University of Maryland, College Park, MD, USA.

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