Searching Metagenomes for New Rhodopsins.

Metagenome Metagenomics Phylogeny Rhodopsins, Microbial / genetics
Aquatic habitats Heliorhodopsin High-throughput sequencing Photic zone Proteorhodopsin

Journal

Methods in molecular biology (Clifton, N.J.)
ISSN: 1940-6029
Titre abrégé: Methods Mol Biol
Pays: United States
ID NLM: 9214969

Informations de publication

Date de publication:
2022
Historique:
entrez: 20 7 2022
pubmed: 21 7 2022
medline: 23 7 2022
Statut: ppublish

Résumé

Most microbial groups have not been cultivated yet, and the only way to approach the enormous diversity of rhodopsins that they contain in a sensible timeframe is through the analysis of their genomes. High-throughput sequencing technologies have allowed the release of community genomics (metagenomics) of many habitats in the photic zones of the ocean and lakes. Already the harvest is impressive and included from the first bacterial rhodopsin (proteorhodopsin) to the recent discovery of heliorhodopsin by functional metagenomics. However, the search continues using bioinformatic or biochemical routes.

Identifiants

DOI: 10.1007/978-1-0716-2329-9_4 PMID: 35857224
pubmed: 35857224
doi: 10.1007/978-1-0716-2329-9_4
doi:

Substances chimiques

Rhodopsins, Microbial 0
heliorhodopsin 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

101-108

Informations de copyright

© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

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Auteurs

Francisco Rodriguez-Valera (F)

Evolutionary Genomics Group, Departamento de Producción Vegetal y Microbiología, Universidad Miguel Hernández, San Juan de Alicante, Alicante, Spain.
Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology (National Research University), Dolgoprudny, Russia.

Alina Pushkarev (A)

Faculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel.

Riccardo Rosselli (R)

Departamento de Fisiología, Genética y Microbiología, Facultad de Ciencias, Universidad de Alicante, Alicante, Spain.

Oded Béjà (O)

Faculty of Biology, Technion - Israel Institute of Technology, Haifa, Israel. beja@technion.ac.il.

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Métagénome › Searching Metagenomes for New Rhodopsins.
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Métagénomique › Searching Metagenomes for New Rhodopsins.
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Searching Metagenomes for New Rhodopsins.
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Photorécepteurs microbiens › Rhodopsines microbiennes › Searching Metagenomes for New Rhodopsins.