Phylogenetic and functional diverse ANME-1 thrive in Arctic hydrothermal vents.
ANME-1
comparative genomics: thermophily
hydrothermal vents
phylogenomics
Journal
FEMS microbiology ecology
ISSN: 1574-6941
Titre abrégé: FEMS Microbiol Ecol
Pays: England
ID NLM: 8901229
Informations de publication
Date de publication:
17 10 2022
17 10 2022
Historique:
received:
12
02
2022
revised:
15
09
2022
accepted:
29
09
2022
pubmed:
4
10
2022
medline:
20
10
2022
entrez:
3
10
2022
Statut:
ppublish
Résumé
The methane-rich areas, the Loki's Castle vent field and the Jan Mayen vent field at the Arctic Mid Ocean Ridge (AMOR), host abundant niches for anaerobic methane-oxidizers, which are predominantly filled by members of the ANME-1. In this study, we used a metagenomic-based approach that revealed the presence of phylogenetic and functional different ANME-1 subgroups at AMOR, with heterogeneous distribution. Based on a common analysis of ANME-1 genomes from AMOR and other geographic locations, we observed that AMOR subgroups clustered with a vent-specific ANME-1 group that occurs solely at vents, and with a generalist ANME-1 group, with a mixed environmental origin. Generalist ANME-1 are enriched in genes coding for stress response and defense strategies, suggesting functional diversity among AMOR subgroups. ANME-1 encode a conserved energy metabolism, indicating strong adaptation to sulfate-methane-rich sediments in marine systems, which does not however prevent global dispersion. A deep branching family named Ca. Veteromethanophagaceae was identified. The basal position of vent-related ANME-1 in phylogenomic trees suggests that ANME-1 originated at hydrothermal vents. The heterogeneous and variable physicochemical conditions present in diffuse venting areas of hydrothermal fields could have favored the diversification of ANME-1 into lineages that can tolerate geochemical and environmental variations.
Identifiants
pubmed: 36190327
pii: 6747120
doi: 10.1093/femsec/fiac117
pmc: PMC9576274
pii:
doi:
Substances chimiques
Sulfates
0
Methane
OP0UW79H66
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
© The Author(s) 2022. Published by Oxford University Press on behalf of FEMS.
Références
Environ Microbiol. 2012 Oct;14(10):2689-710
pubmed: 22882476
Appl Environ Microbiol. 2001 Apr;67(4):1922-34
pubmed: 11282650
Bioinformatics. 2019 Oct 15;35(20):4162-4164
pubmed: 30865266
Sci Rep. 2019 Jul 5;9(1):9725
pubmed: 31278352
ISME J. 2019 Aug;13(8):2135-2139
pubmed: 31048756
Nat Microbiol. 2021 Jul;6(7):946-959
pubmed: 34155373
Front Microbiol. 2016 Jan 07;6:1510
pubmed: 26779165
Nat Rev Microbiol. 2019 May;17(5):271-283
pubmed: 30867583
mBio. 2017 Aug 1;8(4):
pubmed: 28765215
Nucleic Acids Res. 2002 Jul 15;30(14):3059-66
pubmed: 12136088
Environ Microbiol. 2016 Sep;18(9):3073-91
pubmed: 26971539
Nat Microbiol. 2018 Jul;3(7):836-843
pubmed: 29807988
Nat Microbiol. 2016 Jun 13;1(8):16086
pubmed: 27573109
ISME J. 2015 Jul;9(7):1593-606
pubmed: 25575309
Nature. 2000 Oct 5;407(6804):623-6
pubmed: 11034209
Front Microbiol. 2020 Feb 21;11:249
pubmed: 32153535
Genome Biol. 2020 Dec 16;21(1):292
pubmed: 33323122
Bioinformatics. 2015 May 15;31(10):1674-6
pubmed: 25609793
FEMS Microbiol Ecol. 2011 Nov;78(2):233-43
pubmed: 21676010
Nat Biotechnol. 2018 Nov;36(10):996-1004
pubmed: 30148503
Geobiology. 2014 Jul;12(4):308-21
pubmed: 24725254
Sci Adv. 2021 Jul 2;7(27):
pubmed: 34215592
Bioinformatics. 2016 Feb 15;32(4):605-7
pubmed: 26515820
Nucleic Acids Res. 2015 Jan;43(Database issue):D261-9
pubmed: 25428365
Nature. 2015 Oct 22;526(7574):587-90
pubmed: 26490622
ISME J. 2011 Dec;5(12):1946-56
pubmed: 21697963
Nat Commun. 2018 Nov 27;9(1):4999
pubmed: 30479325
Nat Protoc. 2018 Jun;13(6):1310-1330
pubmed: 29773905
Environ Microbiol. 2018 May;20(5):1651-1666
pubmed: 29468803
Nature. 1999 Apr 29;398(6730):802-5
pubmed: 10235261
Nat Methods. 2014 Nov;11(11):1144-6
pubmed: 25218180
PLoS Biol. 2022 Jan 5;20(1):e3001508
pubmed: 34986141
FEMS Microbiol Ecol. 2013 Jan;83(1):214-31
pubmed: 22882187
Appl Environ Microbiol. 2002 Apr;68(4):1994-2007
pubmed: 11916723
Nat Rev Microbiol. 2008 May;6(5):339-48
pubmed: 18414500
Nucleic Acids Res. 2018 Jun 1;46(10):e59
pubmed: 29562347
Front Microbiol. 2018 Jul 16;9:1570
pubmed: 30061874
Appl Environ Microbiol. 2006 Nov;72(11):7218-30
pubmed: 16980428
PeerJ. 2018 Jan 25;6:e4320
pubmed: 29423345
Environ Microbiol. 2010 Feb;12(2):422-39
pubmed: 19878267
Appl Environ Microbiol. 2007 May;73(10):3348-62
pubmed: 17369343
Annu Rev Microbiol. 2009;63:311-34
pubmed: 19575572
Nat Microbiol. 2019 Apr;4(4):595-602
pubmed: 30833728
ISME J. 2012 May;6(5):1018-31
pubmed: 22094346
mSystems. 2020 Oct 27;5(5):
pubmed: 33109753
Nat Microbiol. 2021 Jan;6(1):3-6
pubmed: 33349678
mBio. 2020 Apr 21;11(2):
pubmed: 32317322
PLoS One. 2013 Sep 30;8(9):e72627
pubmed: 24098632
Nature. 2016 Nov 17;539(7629):396-401
pubmed: 27749816
Nucleic Acids Res. 2022 Jan 7;50(D1):D785-D794
pubmed: 34520557
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
Appl Environ Microbiol. 2019 Mar 6;85(6):
pubmed: 30635385
J Mol Biol. 2016 Feb 22;428(4):726-731
pubmed: 26585406
Genome Res. 2015 Jul;25(7):1043-55
pubmed: 25977477
Appl Environ Microbiol. 2004 Sep;70(9):5426-33
pubmed: 15345429
Nat Methods. 2015 Jan;12(1):59-60
pubmed: 25402007
Bioinformatics. 2009 Aug 1;25(15):1972-3
pubmed: 19505945
Nature. 2015 Oct 22;526(7574):531-5
pubmed: 26375009
Front Microbiol. 2016 Mar 31;7:374
pubmed: 27065954
Front Microbiol. 2020 Sep 24;11:1932
pubmed: 33071992
Environ Microbiol. 2012 May;14(5):1333-46
pubmed: 22404914
BMC Bioinformatics. 2010 Mar 08;11:119
pubmed: 20211023
Nat Commun. 2010 Nov 23;1:126
pubmed: 21119639
Appl Environ Microbiol. 2005 Jan;71(1):467-79
pubmed: 15640223
ISME J. 2013 Aug;7(8):1595-608
pubmed: 23446836
Nat Microbiol. 2019 Apr;4(4):603-613
pubmed: 30833729
Bioinformatics. 2019 Nov 15;:
pubmed: 31730192
Bioinformatics. 2020 Apr 1;36(7):2251-2252
pubmed: 31742321
Science. 2004 Sep 3;305(5689):1457-62
pubmed: 15353801
Nat Commun. 2020 Nov 17;11(1):5825
pubmed: 33203858
PeerJ. 2015 Aug 27;3:e1165
pubmed: 26336640
Front Microbiol. 2016 Jan 29;7:17
pubmed: 26858698