Genomic confirmation of Gossypium barbadense introgression into G. hirsutum and a subsequent MAGIC population.
Chromosome substitution
Cotton
Genome sequence
Gossypium barbadense
Interspecific introgression
MAGIC
Journal
Molecular genetics and genomics : MGG
ISSN: 1617-4623
Titre abrégé: Mol Genet Genomics
Pays: Germany
ID NLM: 101093320
Informations de publication
Date de publication:
Jan 2023
Jan 2023
Historique:
received:
26
08
2022
accepted:
30
10
2022
pubmed:
9
11
2022
medline:
10
1
2023
entrez:
8
11
2022
Statut:
ppublish
Résumé
Introgression of superior fiber traits from Pima cotton (Gossypium barbadense, GB) into high yield Upland cotton (G. hirsutum) has been a breeding objective for many years in a few breeding programs in the world. However, progress has been very slow due to introgression barriers resulting from whole genome hybridization between the two species. To minimize such barriers, chromosome substitution lines (CS-B) from Pima cotton 3-79 in an Upland cotton cultivar TM-1 were developed. A multiparent advanced generation inter-cross (MAGIC) population consisting of 180 recombinant inbred lines (RILs) was subsequently made using the 18 CS-B lines and three Upland cotton cultivars as parents. In this research, we sequenced the whole genomes of the 21 parents and 180 RILs to examine the G. barbadense introgression. Of the 18 CS-B lines, 11 contained the target GB chromosome or chromosome segment, two contained more than two GB chromosomes, and five did not have the expected introgression. Residual introgression in non-target chromosomes was prevalent in all CS-B lines. A clear structure existed in the MAGIC population and the 180 RILs were distributed into three groups, i.e., high, moderate, and low GB introgression. Large blocks of GB chromosome introgression were still present in some RILs after five cycles of random-mating, an indication of recombination suppression or other unknown reasons present in the population. Identity by descent analysis revealed that the MAGIC RILs contained less introgression than expected. This research presents an insight on understanding the complex problems of introgression between cotton species.
Identifiants
pubmed: 36346467
doi: 10.1007/s00438-022-01974-3
pii: 10.1007/s00438-022-01974-3
doi:
Substances chimiques
Potassium Iodide
1C4QK22F9J
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
143-152Subventions
Organisme : Cotton Incorporated
ID : 18-192
Organisme : Cotton Incorporated
ID : 19-916
Organisme : Agricultural Research Service
ID : 6054-21000-018-00D
Informations de copyright
© 2022. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.
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