Karyotype evolution of the Asterids insights from the first genome sequences of the family Cornaceae.
Cornus controversa
Asterids
comparative genomics
karyotype evolution
Journal
DNA research : an international journal for rapid publication of reports on genes and genomes
ISSN: 1756-1663
Titre abrégé: DNA Res
Pays: England
ID NLM: 9423827
Informations de publication
Date de publication:
01 Feb 2023
01 Feb 2023
Historique:
received:
30
07
2022
revised:
25
11
2022
accepted:
12
12
2022
pubmed:
16
12
2022
medline:
17
1
2023
entrez:
15
12
2022
Statut:
ppublish
Résumé
Cornaceae is a core representative family in Cornales, the earliest branching lineage in the Asterids on the life tree of angiosperms. This family includes the only genus Cornus, a group of ~55 species. These species occur widely in Northern Hemisphere and have been used as resources for horticultural ornaments, medicinal and industrial manufacturing. However, no any genome sequences are available for this family. Here, we reported a chromosome-level genome for Cornus controversa. This was generated using high-fidelity plus Hi-C sequencing, and totally ~771.80 Mb assembled sequences and 39,886 protein-coding genes were obtained. We provided evidence for a whole-genome duplication event (WGD) unique to C. controversa. The evolutionary features of this genome indicated that the expanded and unique genes might have contributed to response to stress, stimulus and defense. By using chromosome-level syntenic blocks shared between eight living genomes, we found high degrees of genomic diversification from the ancestral core-eudicot genome to the present-day genomes, suggesting an important role of WGD in genomic plasticity that leads to speciation and diversification. These results provide foundational insights on the evolutionary history of Cornaceae, as well as on the Asterids diversification.
Identifiants
pubmed: 36521020
pii: 6912218
doi: 10.1093/dnares/dsac051
pmc: PMC9835862
pii:
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : National Key Research and Development Program of China
ID : 2021YFD2200202
Organisme : Strategic Priority Research Program of the Chinese Academy of Sciences
ID : XDB31010300
Organisme : National Natural Science Foundation of China
ID : 31901074
Informations de copyright
© The Author(s) 2022. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.
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